DNase-seq_ENCSR000EPT
DNase-seq ENCSR000EPT [biosample_summary="Homo sapiens Panc1"]
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| Id: | DNase-seq/ENCSR000EPT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EPT [biosample_summary="Homo sapiens Panc1"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN611PVG|/analyses/ENCAN611PVG/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF585MZD|/files/ENCFF585MZD/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 26246147 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF770RAW|/files/ENCFF770RAW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 26560893 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF048ENW|/files/ENCFF048ENW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 26362336 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF375IJW|/files/ENCFF375IJW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 26077948 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EPT | float |
DNase-seq_ENCSR000EPT |
DNase-seq ENCSR000EPT [biosample_summary="Homo sapiens Panc1"]
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[3, 1.68e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF115TDX.bed.gz | 516.87 KB | d43cc9a09d4a82a93e719bc01bf69972 |
| ENCFF115TDX.bed.gz.dvc | 100.0 B | c73d4b8ad46469b1cd8f010e9c174bf2 |
| ENCFF115TDX.tabix.bed.gz | 443.32 KB | 807fd3110521d94916d904edf52536c9 |
| ENCFF115TDX.tabix.bed.gz.dvc | 106.0 B | f33fc6309c6fc8edca23d36f8cfc2d95 |
| ENCFF115TDX.tabix.bed.gz.tbi | 282.27 KB | 96f76d9bd8f64b53fda2bc90a7459cab |
| ENCFF115TDX.tabix.bed.gz.tbi.dvc | 110.0 B | 3bc5b3bec5d8dcc6c72b5f097b5d0779 |
| genomic_resource.yaml | 3.73 KB | cd41e2bd1ca350b536ca8d3c43f95cc4 |
| genomic_resource_original.yaml | 3.67 KB | 5ef8e9af608690b732a43e5ef7e16c2e |
| statistics/ |