Resource

Id DNase-seq/ENCSR000EPRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EPR [biosample_summary="Homo sapiens fibroblast of lung male adult (45 years)"]
Description
Labels
  • accession: ENCSR000EPR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002553/
  • biosample_summary: Homo sapiens fibroblast of lung male adult (45 years)
  • date_created: 2014-01-16T21:45:12.957104+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EPR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (45 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EPR float

DNase-seq_ENCSR000EPR
DNase-seq ENCSR000EPR [biosample_summary="Homo sapiens fibroblast of lung male adult (45 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR000EPR [1, 4.38e+04]
n
58,595,484
mean
368
sd
750

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 585954841.82% 390308
chr1 5200435 2.09% 34646
chr2 5089383 2.10% 33900
chr3 4183665 2.11% 27868
chr4 3522302 1.85% 23456
chr5 3670247 2.02% 24447
chr6 3629364 2.12% 24173
chr7 3058504 1.92% 20368
chr8 2890714 1.99% 19254
chr9 2427456 1.75% 16172
chr10 2774644 2.07% 18479
chr11 2836555 2.10% 18901
chr12 2883943 2.16% 19211
chr13 1838260 1.61% 12248
chr14 1798806 1.68% 11978
chr15 1841535 1.81% 12272
chr16 1598046 1.77% 10647
chr17 2011006 2.42% 13401
chr18 1483019 1.85% 9877
chr19 1249423 2.13% 8323
chr20 1289670 2.00% 8590
chr21 688372 1.47% 4588
chr22 846995 1.67% 5641
chrX 1764240 1.13% 11742
chrY 18900 0.03% 126
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 390308 22 300 150.13 150
global segment-length histogram

Files

Filename Size md5
ENCFF331SYD.bed.gz 3.69 MB 3d6417924afd5b819266f121688a208f
ENCFF331SYD.tabix.bed.gz 3.21 MB e6693136954060dfd1a4714decf05424
ENCFF331SYD.tabix.bed.gz.tbi 863.63 KB b0cbbf3ed8a481e9b0866e568a7006ac
genomic_resource.yaml 1.39 KB f9ff2e50ede33cd6949d4404b6c8ffcb
statistics/