Resource

Id DNase-seq/ENCSR000EPPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EPP [biosample_summary="Homo sapiens foreskin fibroblast male newborn"]
Description
Labels
  • accession: ENCSR000EPP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001608/
  • biosample_summary: Homo sapiens foreskin fibroblast male newborn
  • date_created: 2014-01-16T21:45:11.235017+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EPP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EPP float

DNase-seq_ENCSR000EPP

DNase-seq ENCSR000EPP [biosample_summary="Homo sapiens foreskin fibroblast male newborn"]
HISTOGRAM FOR DNase-seq_ENCSR000EPP [6, 2.01e+05]
n
54,774,952
mean
407
sd
1.01e+03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 547749521.70% 364887
chr1 4930003 1.98% 32834
chr2 4683623 1.93% 31203
chr3 3818998 1.93% 25444
chr4 3022285 1.59% 20136
chr5 3334127 1.84% 22207
chr6 3498323 2.05% 23311
chr7 2801746 1.76% 18663
chr8 2704523 1.86% 18014
chr9 2379445 1.72% 15852
chr10 2665300 1.99% 17757
chr11 2560014 1.90% 17052
chr12 2724472 2.04% 18147
chr13 1634747 1.43% 10885
chr14 1675295 1.57% 11161
chr15 1755676 1.72% 11699
chr16 1523391 1.69% 10152
chr17 1987006 2.39% 13242
chr18 1320771 1.64% 8798
chr19 1234972 2.11% 8227
chr20 1321299 2.05% 8803
chr21 674550 1.44% 4494
chr22 799719 1.57% 5331
chrX 1627767 1.04% 10829
chrY 96900 0.17% 646
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 364887 23 450 150.11 150
global segment-length histogram

Files

Filename Size md5
ENCFF674URJ.bed.gz 3.46 MB 29b91108fb4546a18edf937436f60171
ENCFF674URJ.tabix.bed.gz 3.0 MB 022dfe7322e890300b42c13cc5a0aaf1
ENCFF674URJ.tabix.bed.gz.tbi 819.19 KB 5eafa0279e5c83f76f05aaef174ce31b
genomic_resource.yaml 1.94 KB 0b223587a984140000b52d182322c60d
statistics/