DNase-seq_ENCSR000EPP
DNase-seq ENCSR000EPP [biosample_summary="Homo sapiens foreskin fibroblast male newborn"]
×
| Id: | DNase-seq/ENCSR000EPP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EPP [biosample_summary="Homo sapiens foreskin fibroblast male newborn"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male newborn output_type: peaks audit_internal_action: Archived analysis {ENCAN098BOO|/analyses/ENCAN098BOO/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF732BYR|/files/ENCFF732BYR/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 38942186 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EPP | float |
DNase-seq_ENCSR000EPP |
DNase-seq ENCSR000EPP [biosample_summary="Homo sapiens foreskin fibroblast male newborn"]
|
|
[6, 2.01e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF674URJ.bed.gz | 3.46 MB | 29b91108fb4546a18edf937436f60171 |
| ENCFF674URJ.bed.gz.dvc | 101.0 B | 5b17c5c0f14988b20ecf7f4a996c29f0 |
| ENCFF674URJ.tabix.bed.gz | 3.0 MB | 022dfe7322e890300b42c13cc5a0aaf1 |
| ENCFF674URJ.tabix.bed.gz.dvc | 107.0 B | 343de93701e1dc0fef5a2de5b91bf269 |
| ENCFF674URJ.tabix.bed.gz.tbi | 819.19 KB | 5eafa0279e5c83f76f05aaef174ce31b |
| ENCFF674URJ.tabix.bed.gz.tbi.dvc | 110.0 B | 91c8340b83656f8fd46143d7efdb1ed3 |
| genomic_resource.yaml | 1.94 KB | 0b223587a984140000b52d182322c60d |
| genomic_resource_original.yaml | 1.85 KB | 9a3b63c421e441673458cb6e672add93 |
| statistics/ |