DNase-seq_ENCSR000EPO
DNase-seq ENCSR000EPO [biosample_summary="Homo sapiens fibroblast of dermis female adult"]
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| Id: | DNase-seq/ENCSR000EPO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EPO [biosample_summary="Homo sapiens fibroblast of dermis female adult"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult output_type: peaks audit_warning: Alignment file {ENCFF107EUK|/files/ENCFF107EUK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 41436580 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EPO | float |
DNase-seq_ENCSR000EPO |
DNase-seq ENCSR000EPO [biosample_summary="Homo sapiens fibroblast of dermis female adult"]
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[0.0304, 46.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF184KAM.bed.gz | 3.09 MB | 4ec44181338b033c07a1123343712ca5 |
| ENCFF184KAM.bed.gz.dvc | 101.0 B | b4b3e1d71a6c60af21e1ed49859d1aee |
| ENCFF184KAM.tabix.bed.gz | 2.81 MB | baba87390b75f9be9f7e7357403b6d61 |
| ENCFF184KAM.tabix.bed.gz.dvc | 107.0 B | 0e97844c51e795fa32c1626c4d379eed |
| ENCFF184KAM.tabix.bed.gz.tbi | 748.34 KB | 40cd879f9436b56b02976da8a809c5dc |
| ENCFF184KAM.tabix.bed.gz.tbi.dvc | 110.0 B | d7541131fb7c9d0e6f075250de8ba737 |
| genomic_resource.yaml | 1.79 KB | 315e4f5c676f16e76c7122eb2fe2609a |
| genomic_resource_original.yaml | 1.7 KB | 0325b5ad4a79703ca183b10bf0edfeef |
| statistics/ |