Resource

Id DNase-seq/ENCSR000EPMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EPM [biosample_summary="Homo sapiens astrocyte"]
Description
Labels
  • accession: ENCSR000EPM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000127/
  • biosample_summary: Homo sapiens astrocyte
  • date_created: 2014-01-17T20:40:14.656630+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EPM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EPM float

DNase-seq_ENCSR000EPM
DNase-seq ENCSR000EPM [biosample_summary="Homo sapiens astrocyte"]
 HISTOGRAM FOR DNase-seq_ENCSR000EPM [0.0409, 45.6]
n
43,409,411
mean
1.7
sd
2.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 434094111.35% 225776
chr1 3841722 1.54% 20084
chr2 3806140 1.57% 19812
chr3 3125849 1.58% 16180
chr4 2594252 1.36% 13616
chr5 2735568 1.51% 14220
chr6 2753931 1.61% 14249
chr7 2219260 1.39% 11569
chr8 2156819 1.49% 11130
chr9 1813880 1.31% 9387
chr10 2090681 1.56% 10868
chr11 2102144 1.56% 10914
chr12 2179492 1.64% 11272
chr13 1335405 1.17% 6960
chr14 1345989 1.26% 7000
chr15 1365570 1.34% 7142
chr16 1166095 1.29% 6102
chr17 1484496 1.78% 7741
chr18 1081651 1.35% 5651
chr19 930093 1.59% 4824
chr20 958262 1.49% 4926
chr21 504732 1.08% 2587
chr22 611863 1.20% 3204
chrX 1204957 0.77% 6333
chrY 560 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 225776 1 740 192.27 200
global segment-length histogram

Files

Filename Size md5
ENCFF503LDV.bed.gz 2.4 MB 2cc95f88480a73051447be84cac9f5b1
ENCFF503LDV.tabix.bed.gz 2.19 MB abe78f6922b72e4e2d3776ca068b3246
ENCFF503LDV.tabix.bed.gz.tbi 681.57 KB 9ee136e3e8d70a69430bf2e533d76b2d
genomic_resource.yaml 1.71 KB 0b64b9136e3a1d16ae8fcd74ec2cdeea
statistics/