Resource

Id DNase-seq/ENCSR000EPLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EPL [biosample_summary="Homo sapiens NB4"]
Description
Labels
  • accession: ENCSR000EPL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002798/
  • biosample_summary: Homo sapiens NB4
  • date_created: 2013-12-12T07:09:42.956238+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EPL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EPL float

DNase-seq_ENCSR000EPL

DNase-seq ENCSR000EPL [biosample_summary="Homo sapiens NB4"]
HISTOGRAM FOR DNase-seq_ENCSR000EPL [0.0207, 89.2]
n
37,719,987
mean
2.05
sd
3.64

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 377199871.17% 200158
chr1 3396763 1.36% 18013
chr2 3116366 1.29% 16699
chr3 2206220 1.11% 11911
chr4 1617517 0.85% 8775
chr5 1936416 1.07% 10422
chr6 2280903 1.34% 12029
chr7 2009508 1.26% 10747
chr8 1558315 1.07% 8421
chr9 1596525 1.15% 8401
chr10 1759489 1.32% 9398
chr11 1908554 1.41% 10001
chr12 1968669 1.48% 10401
chr13 984212 0.86% 5313
chr14 1105585 1.03% 5914
chr15 1264481 1.24% 6726
chr16 1408206 1.56% 7357
chr17 1748597 2.10% 8983
chr18 731090 0.91% 3941
chr19 1592087 2.72% 7976
chr20 1148169 1.78% 6053
chr21 416722 0.89% 2205
chr22 775127 1.53% 4026
chrX 1188850 0.76% 6434
chrY 1616 <0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 200158 2 860 188.45 180
global segment-length histogram

Files

Filename Size md5
ENCFF218WIP.bed.gz 2.19 MB bd1bc7878f1d778bf1f9693555c9accb
ENCFF218WIP.tabix.bed.gz 2.0 MB a19c905c7073e8a3119093687bcdd6c3
ENCFF218WIP.tabix.bed.gz.tbi 617.83 KB 77ee4974a618ca162fadfd09ea9750cc
genomic_resource.yaml 1.68 KB 972765944729847f54de64ea7006f99d
statistics/