DNase-seq_ENCSR000EPH
DNase-seq ENCSR000EPH [biosample_summary="Homo sapiens MCF-7"]
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| Id: | DNase-seq/ENCSR000EPH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EPH [biosample_summary="Homo sapiens MCF-7"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN069OPA|/analyses/ENCAN069OPA/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF100MIL|/files/ENCFF100MIL/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 44796019 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF955DEC|/files/ENCFF955DEC/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 44577938 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EPH | float |
DNase-seq_ENCSR000EPH |
DNase-seq ENCSR000EPH [biosample_summary="Homo sapiens MCF-7"]
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[3, 9.18e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF229SJW.bed.gz | 2.05 MB | ee364c920c0f415bed3feb5c21d4a2c1 |
| ENCFF229SJW.bed.gz.dvc | 101.0 B | 1b80c9aa50e2afd3a34a3eba0abbdf97 |
| ENCFF229SJW.tabix.bed.gz | 1.77 MB | c7ab21b50a6da05b3d9c597b68a56097 |
| ENCFF229SJW.tabix.bed.gz.dvc | 107.0 B | 61cd04c4830d8aa615df9d05deef401c |
| ENCFF229SJW.tabix.bed.gz.tbi | 771.27 KB | c0a8492c6b8718cd2d0066da466997da |
| ENCFF229SJW.tabix.bed.gz.tbi.dvc | 110.0 B | c187ca55f704e4c2acaf35c23bbee3b5 |
| genomic_resource.yaml | 2.49 KB | 2523f2f2145d9623e85dadc599e2d46d |
| genomic_resource_original.yaml | 2.42 KB | 54842d3e666f7ba6ec87b67faa35f084 |
| statistics/ |