Resource

Id DNase-seq/ENCSR000EPGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EPG [biosample_summary="Homo sapiens M059J"]
Description
Labels
  • accession: ENCSR000EPG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005697/
  • biosample_summary: Homo sapiens M059J
  • date_created: 2013-12-12T07:09:36.130816+00:00
  • date_released: 2012-06-12
  • doi: 10.17989/ENCSR000EPG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EPG float

DNase-seq_ENCSR000EPG
DNase-seq ENCSR000EPG [biosample_summary="Homo sapiens M059J"]
 HISTOGRAM FOR DNase-seq_ENCSR000EPG [0.0224, 34.5]
n
55,913,571
mean
1.66
sd
2.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 559135711.74% 289584
chr1 5239140 2.10% 27105
chr2 4398375 1.82% 22931
chr3 3849718 1.94% 19884
chr4 2881226 1.51% 15175
chr5 3441437 1.90% 17796
chr6 3860672 2.26% 19784
chr7 2944227 1.85% 15388
chr8 2502490 1.72% 13037
chr9 2492330 1.80% 12893
chr10 2542925 1.90% 13188
chr11 2847480 2.11% 14647
chr12 2724141 2.04% 14112
chr13 1419348 1.24% 7398
chr14 1558123 1.46% 8075
chr15 1756388 1.72% 9013
chr16 1706175 1.89% 8796
chr17 2017952 2.42% 10380
chr18 1360589 1.69% 7096
chr19 1439345 2.46% 7336
chr20 1630674 2.53% 8365
chr21 655323 1.40% 3362
chr22 808272 1.59% 4174
chrX 1811024 1.16% 9494
chrY 26197 0.05% 155
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 289584 1 1120 193.08 188
global segment-length histogram

Files

Filename Size md5
ENCFF355POY.bed.gz 3.13 MB 1b24a16f70f6df80a378c5cd2a990875
ENCFF355POY.tabix.bed.gz 2.86 MB 8482374f230e891eb4ffa1c600755bb2
ENCFF355POY.tabix.bed.gz.tbi 745.47 KB 14c0ed7a4d9802311f5b2c14bddfe138
genomic_resource.yaml 1.7 KB e3e5139a8450c930968c71d61a7b021b
statistics/