DNase-seq_ENCSR000EPF
DNase-seq ENCSR000EPF [biosample_summary="Homo sapiens LNCaP clone FGC"]
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| Id: | DNase-seq/ENCSR000EPF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EPF [biosample_summary="Homo sapiens LNCaP clone FGC"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF082JPF|/files/ENCFF082JPF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27792392 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF906VSV|/files/ENCFF906VSV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 36175293 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EPF | float |
DNase-seq_ENCSR000EPF |
DNase-seq ENCSR000EPF [biosample_summary="Homo sapiens LNCaP clone FGC"]
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[0.218, 46] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF422MXW.bed.gz | 1.01 MB | d987cdab7f470e4fe1e020d9801af944 |
| ENCFF422MXW.bed.gz.dvc | 101.0 B | 993f693fc1f6e0e0cd556873a13961a8 |
| ENCFF422MXW.tabix.bed.gz | 925.83 KB | 29d84d969d07637039ea7f6a2b2decb5 |
| ENCFF422MXW.tabix.bed.gz.dvc | 106.0 B | 8c9b6b3d5d6d799e942b735106ecf3fb |
| ENCFF422MXW.tabix.bed.gz.tbi | 489.24 KB | 18c6eca6650c3304f1b9c7a265c6e983 |
| ENCFF422MXW.tabix.bed.gz.tbi.dvc | 110.0 B | 1e852ada9c27cf84b6745b1b9d0b4f00 |
| genomic_resource.yaml | 2.37 KB | ecb57235873dadf3d60a2608347c3324 |
| genomic_resource_original.yaml | 2.29 KB | 3462fe258a069f0a9f53c47ceb7119fe |
| statistics/ |