Resource

Id DNase-seq/ENCSR000EPDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EPD [biosample_summary="Homo sapiens myocyte originated from LHCN-M2"]
Description
Labels
  • accession: ENCSR000EPD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000187/
  • biosample_summary: Homo sapiens myocyte originated from LHCN-M2
  • date_created: 2013-12-12T07:09:32.833334+00:00
  • date_released: 2012-06-12
  • doi: 10.17989/ENCSR000EPD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (41 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EPD float

DNase-seq_ENCSR000EPD
DNase-seq ENCSR000EPD [biosample_summary="Homo sapiens myocyte originated from LHCN-M2"]
 HISTOGRAM FOR DNase-seq_ENCSR000EPD [0.0331, 27.5]
n
47,937,578
mean
1.66
sd
2.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 479375781.49% 239431
chr1 4375446 1.76% 21593
chr2 4010787 1.66% 20151
chr3 3231210 1.63% 16207
chr4 2534923 1.33% 12834
chr5 2752620 1.52% 13860
chr6 2981367 1.75% 14825
chr7 2737397 1.72% 13765
chr8 2162361 1.49% 10911
chr9 2048630 1.48% 10213
chr10 2306927 1.72% 11480
chr11 2342340 1.73% 11674
chr12 2358369 1.77% 11657
chr13 1324605 1.16% 6690
chr14 1445683 1.35% 7167
chr15 1557235 1.53% 7762
chr16 1478347 1.64% 7329
chr17 1964489 2.36% 9687
chr18 1007125 1.25% 5146
chr19 1338780 2.28% 6500
chr20 1182573 1.84% 5928
chr21 565916 1.21% 2796
chr22 891310 1.75% 4340
chrX 1271243 0.81% 6565
chrY 67895 0.12% 351
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 239431 1 1100 200.21 200
global segment-length histogram

Files

Filename Size md5
ENCFF097CRX.bed.gz 2.56 MB a4a4734f5e1a8c7f9435212a879fcc83
ENCFF097CRX.tabix.bed.gz 2.34 MB 979c8353c0e29546d140796efa47dda1
ENCFF097CRX.tabix.bed.gz.tbi 691.24 KB 535c2337733afdb85f24fdc3e8537cf6
genomic_resource.yaml 1.82 KB a73243c1b051bedf8355684d2241dbc6
statistics/