DNase-seq_ENCSR000EOT
DNase-seq ENCSR000EOT [biosample_summary="Homo sapiens K562"]
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| Id: | DNase-seq/ENCSR000EOT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EOT [biosample_summary="Homo sapiens K562"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_error: Alignment file {ENCFF425WDA|/files/ENCFF425WDA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 17851592 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOT | float |
DNase-seq_ENCSR000EOT |
DNase-seq ENCSR000EOT [biosample_summary="Homo sapiens K562"]
|
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[0.0332, 120] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF185XRG.bed.gz | 1.74 MB | 04653af177917b3dda96b9454fd8f90e |
| ENCFF185XRG.bed.gz.dvc | 101.0 B | d482b6f79080e6de399f03f2fd932cef |
| ENCFF185XRG.tabix.bed.gz | 1.58 MB | 9cd7e2fd1cd9a34426e04266cbdbf327 |
| ENCFF185XRG.tabix.bed.gz.dvc | 107.0 B | 8dbb26b36d52a06e503b40322115f830 |
| ENCFF185XRG.tabix.bed.gz.tbi | 514.94 KB | 4ef0b59e49482d6ffd85910e9a17cba7 |
| ENCFF185XRG.tabix.bed.gz.tbi.dvc | 110.0 B | 38935bafd8bb07222c48018830d60ec6 |
| genomic_resource.yaml | 1.69 KB | 5e9b753dec12e10ea691ae65c8ee64f2 |
| genomic_resource_original.yaml | 1.62 KB | 876e2d0c1cc9b97b63e7d6203c05264f |
| statistics/ |