DNase-seq_ENCSR000EOS
DNase-seq ENCSR000EOS [biosample_summary="Homo sapiens Jurkat, Clone E6-1"]
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| Id: | DNase-seq/ENCSR000EOS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EOS [biosample_summary="Homo sapiens Jurkat, Clone E6-1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN073DEM|/analyses/ENCAN073DEM/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF731JTZ|/files/ENCFF731JTZ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 32051899 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF825XSS|/files/ENCFF825XSS/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 31755241 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOS | float |
DNase-seq_ENCSR000EOS |
DNase-seq ENCSR000EOS [biosample_summary="Homo sapiens Jurkat, Clone E6-1"]
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[4, 2.1e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF785KPP.bed.gz | 1.25 MB | d0781aded855dcb593c472b31d6af85c |
| ENCFF785KPP.bed.gz.dvc | 101.0 B | 5f7347244001758fe3a1a9e3715a5b1c |
| ENCFF785KPP.tabix.bed.gz | 1.08 MB | d9d89f7579f40c09b6174fe04afaeb14 |
| ENCFF785KPP.tabix.bed.gz.dvc | 107.0 B | fd03b4157cd28dcce5ce7b3cedde0139 |
| ENCFF785KPP.tabix.bed.gz.tbi | 551.98 KB | a7793509c35a5238edcb5431c996b137 |
| ENCFF785KPP.tabix.bed.gz.tbi.dvc | 110.0 B | 5591f0945cb455413f13ff3f8d2f5afa |
| genomic_resource.yaml | 2.53 KB | 74e6d8e36c12694334372d9fa446028f |
| genomic_resource_original.yaml | 2.45 KB | 4ec56d95270f474c8628db12183ab092 |
| statistics/ |