Resource
| Id | DNase-seq/ENCSR000EOR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EOR [biosample_summary="Homo sapiens fibroblast of villous mesenchyme"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN185TOS|/analyses/ENCAN185TOS/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOR | float |
DNase-seq_ENCSR000EOR |
DNase-seq ENCSR000EOR [biosample_summary="Homo sapiens fibroblast of villous mesenchyme"]
|
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[4, 2.99e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49575136 | 1.54% | 330102 |
| chr1 | 4365928 | 1.75% | 29078 |
| chr2 | 4184156 | 1.73% | 27865 |
| chr3 | 3315071 | 1.67% | 22057 |
| chr4 | 2782427 | 1.46% | 18516 |
| chr5 | 2932912 | 1.62% | 19535 |
| chr6 | 3110631 | 1.82% | 20717 |
| chr7 | 2585882 | 1.62% | 17227 |
| chr8 | 2420632 | 1.67% | 16115 |
| chr9 | 2118518 | 1.53% | 14108 |
| chr10 | 2408271 | 1.80% | 16030 |
| chr11 | 2354832 | 1.74% | 15674 |
| chr12 | 2489186 | 1.87% | 16572 |
| chr13 | 1464862 | 1.28% | 9757 |
| chr14 | 1518720 | 1.42% | 10111 |
| chr15 | 1625779 | 1.59% | 10830 |
| chr16 | 1445365 | 1.60% | 9629 |
| chr17 | 1901216 | 2.28% | 12667 |
| chr18 | 1152037 | 1.43% | 7674 |
| chr19 | 1256096 | 2.14% | 8365 |
| chr20 | 1186225 | 1.84% | 7899 |
| chr21 | 603279 | 1.29% | 4018 |
| chr22 | 775142 | 1.53% | 5164 |
| chrX | 1504919 | 0.96% | 10009 |
| chrY | 73050 | 0.13% | 485 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 330102 | 29 | 385 | 150.18 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF311UAO.bed.gz | 3.12 MB | 455b036a967f344861eb48bee8bea7f1 |
| ENCFF311UAO.tabix.bed.gz | 2.71 MB | 52d49d438b047518f1419eab20c9cd30 |
| ENCFF311UAO.tabix.bed.gz.tbi | 797.51 KB | f393d8af460ad4c063b88912ab898efe |
| genomic_resource.yaml | 1.33 KB | 3d5cfaaa7b4a661328b4dadd3ee4127c |
| statistics/ |
