Resource
| Id | DNase-seq/ENCSR000EOP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EOP [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Replicate 2_1 has no significant footprints detected. audit_warning: Alignment file {ENCFF151AKL|/files/ENCFF151AKL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28227621 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF975TMB|/files/ENCFF975TMB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 25544145 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOP | float |
DNase-seq_ENCSR000EOP |
DNase-seq ENCSR000EOP [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast"]
|
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[0.286, 12.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7997610 | 0.25% | 43316 |
| chr1 | 744574 | 0.30% | 4008 |
| chr2 | 680563 | 0.28% | 3710 |
| chr3 | 541445 | 0.27% | 2948 |
| chr4 | 423947 | 0.22% | 2304 |
| chr5 | 480380 | 0.26% | 2590 |
| chr6 | 509389 | 0.30% | 2741 |
| chr7 | 404301 | 0.25% | 2234 |
| chr8 | 358443 | 0.25% | 1963 |
| chr9 | 342588 | 0.25% | 1847 |
| chr10 | 386379 | 0.29% | 2105 |
| chr11 | 407815 | 0.30% | 2170 |
| chr12 | 396156 | 0.30% | 2146 |
| chr13 | 206718 | 0.18% | 1141 |
| chr14 | 237857 | 0.22% | 1290 |
| chr15 | 254418 | 0.25% | 1393 |
| chr16 | 236451 | 0.26% | 1292 |
| chr17 | 300780 | 0.36% | 1624 |
| chr18 | 175972 | 0.22% | 971 |
| chr19 | 310227 | 0.53% | 1566 |
| chr20 | 194935 | 0.30% | 1055 |
| chr21 | 97099 | 0.21% | 508 |
| chr22 | 135260 | 0.27% | 715 |
| chrX | 164110 | 0.11% | 942 |
| chrY | 7803 | 0.01% | 53 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 43316 | 2 | 800 | 184.63 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF211XOC.bed.gz | 463.19 KB | 1252b4de6aff94d75cdffbe02b558bb0 |
| ENCFF211XOC.tabix.bed.gz | 404.5 KB | d90defd0fd32b470e3d561e53fbd4ada |
| ENCFF211XOC.tabix.bed.gz.tbi | 269.45 KB | 8cc58beb531f5f3615f4c65d484f08cd |
| genomic_resource.yaml | 2.57 KB | 849a3dd92ee664f3ff109423d768c1b1 |
| statistics/ |
