DNase-seq_ENCSR000EOP
DNase-seq ENCSR000EOP [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast"]
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| Id: | DNase-seq/ENCSR000EOP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EOP [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Replicate 2_1 has no significant footprints detected. audit_warning: Alignment file {ENCFF151AKL|/files/ENCFF151AKL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28227621 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF975TMB|/files/ENCFF975TMB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 25544145 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOP | float |
DNase-seq_ENCSR000EOP |
DNase-seq ENCSR000EOP [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast"]
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[0.286, 12.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF211XOC.bed.gz | 463.19 KB | 1252b4de6aff94d75cdffbe02b558bb0 |
| ENCFF211XOC.bed.gz.dvc | 100.0 B | d9520dbb715f90ebed5a7e3e18dbfa97 |
| ENCFF211XOC.tabix.bed.gz | 404.5 KB | d90defd0fd32b470e3d561e53fbd4ada |
| ENCFF211XOC.tabix.bed.gz.dvc | 106.0 B | 061396aec00a03d7266ece03d1c062d7 |
| ENCFF211XOC.tabix.bed.gz.tbi | 269.45 KB | 8cc58beb531f5f3615f4c65d484f08cd |
| ENCFF211XOC.tabix.bed.gz.tbi.dvc | 110.0 B | 22fa65cbcd48cb8120af1f2229e58c0f |
| genomic_resource.yaml | 2.57 KB | 849a3dd92ee664f3ff109423d768c1b1 |
| genomic_resource_original.yaml | 2.46 KB | 184ba806bd8f3961c1bfbf006ec87613 |
| statistics/ |