DNase-seq_ENCSR000EOO
DNase-seq ENCSR000EOO [biosample_summary="Homo sapiens skeletal muscle myoblast"]
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| Id: | DNase-seq/ENCSR000EOO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EOO [biosample_summary="Homo sapiens skeletal muscle myoblast"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF701QQE|/files/ENCFF701QQE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 34054837 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOO | float |
DNase-seq_ENCSR000EOO |
DNase-seq ENCSR000EOO [biosample_summary="Homo sapiens skeletal muscle myoblast"]
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[0.0121, 38.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF647RNC.bed.gz | 4.06 MB | 656db8b981613321290fbdd659bd68f7 |
| ENCFF647RNC.bed.gz.dvc | 101.0 B | 12cabb9195f0e79bb5369fd3d4977b22 |
| ENCFF647RNC.tabix.bed.gz | 3.7 MB | dfce2f636498e356abf9737c8122a9cb |
| ENCFF647RNC.tabix.bed.gz.dvc | 107.0 B | 27cf95d9f57d314130ee154a31253b23 |
| ENCFF647RNC.tabix.bed.gz.tbi | 808.05 KB | 006aee3fabc8b6dc7cc247a4162569a3 |
| ENCFF647RNC.tabix.bed.gz.tbi.dvc | 110.0 B | d597b3e622e851254b98445ef79c3d33 |
| genomic_resource.yaml | 1.75 KB | 4b83d331225cc246d0cceb39d1e9e9e2 |
| genomic_resource_original.yaml | 1.67 KB | 6a8482dc4c963eb6546617e8a061238c |
| statistics/ |