DNase-seq_ENCSR000EON
DNase-seq ENCSR000EON [biosample_summary="Homo sapiens retinal pigment epithelial cell"]
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| Id: | DNase-seq/ENCSR000EON |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EON [biosample_summary="Homo sapiens retinal pigment epithelial cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF157ZQZ|/files/ENCFF157ZQZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27113490 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF864MVZ|/files/ENCFF864MVZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24894494 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EON | float |
DNase-seq_ENCSR000EON |
DNase-seq ENCSR000EON [biosample_summary="Homo sapiens retinal pigment epithelial cell"]
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[0.186, 36] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF595DAC.bed.gz | 962.98 KB | 4e96c576dee50520058c9c28874d48de |
| ENCFF595DAC.bed.gz.dvc | 100.0 B | 59a5cd9fccae4bb02d4836cf4768fccf |
| ENCFF595DAC.tabix.bed.gz | 850.69 KB | 8819b51d8e9b3fe23314ba38a86ec43d |
| ENCFF595DAC.tabix.bed.gz.dvc | 106.0 B | ed9633e5218c4d0879f88fe30832ba82 |
| ENCFF595DAC.tabix.bed.gz.tbi | 455.07 KB | 0be36382fb09950779283409c09e5dd8 |
| ENCFF595DAC.tabix.bed.gz.tbi.dvc | 110.0 B | 0f1011fe3c4ac76330f364706d5db35f |
| genomic_resource.yaml | 2.42 KB | 3fab04d161633a8a1b31cbfbeb4b5af9 |
| genomic_resource_original.yaml | 2.33 KB | 7c7520d256d2bd02480e0546bd12bec2 |
| statistics/ |