Resource

Id DNase-seq/ENCSR000EOMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EOM [biosample_summary="Homo sapiens glomerular endothelial cell"]
Description
Labels
  • accession: ENCSR000EOM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002188/
  • biosample_summary: Homo sapiens glomerular endothelial cell
  • date_created: 2013-09-13T16:01:05.193935-08:00
  • date_released: 2011-05-04
  • doi: 10.17989/ENCSR000EOM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EOM float

DNase-seq_ENCSR000EOM

DNase-seq ENCSR000EOM [biosample_summary="Homo sapiens glomerular endothelial cell"]
HISTOGRAM FOR DNase-seq_ENCSR000EOM [3, 958]
n
9,892,216
mean
40.6
sd
31.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 98922160.31% 65768
chr1 919742 0.37% 6115
chr2 800447 0.33% 5324
chr3 684080 0.34% 4544
chr4 557899 0.29% 3712
chr5 575348 0.32% 3826
chr6 646682 0.38% 4301
chr7 516369 0.32% 3436
chr8 454361 0.31% 3018
chr9 400336 0.29% 2660
chr10 465555 0.35% 3094
chr11 488557 0.36% 3252
chr12 515447 0.39% 3429
chr13 293676 0.26% 1951
chr14 311081 0.29% 2068
chr15 312363 0.31% 2074
chr16 275360 0.30% 1831
chr17 367896 0.44% 2446
chr18 234871 0.29% 1559
chr19 303294 0.52% 2021
chr20 230250 0.36% 1531
chr21 117375 0.25% 777
chr22 146519 0.29% 973
chrX 272908 0.17% 1814
chrY 1800 <0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65768 35 336 150.41 150
global segment-length histogram

Files

Filename Size md5
ENCFF927KUT.bed.gz 638.83 KB c84ad6fbea6905be95b16b2bba0468b5
ENCFF927KUT.tabix.bed.gz 548.6 KB 6ba915b512754bb7c39afc9f253b3585
ENCFF927KUT.tabix.bed.gz.tbi 355.66 KB 7ed1b2e3ba80a359383751cd049c494d
genomic_resource.yaml 1.32 KB 8e3db2d55582486250e37f21dbb79470
statistics/