Resource
| Id | DNase-seq/ENCSR000EOL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EOL [biosample_summary="Homo sapiens kidney epithelial cell"] |
| Description |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Alignment file {ENCFF778EVH|/files/ENCFF778EVH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22656669 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF337FBC|/files/ENCFF337FBC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24095765 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOL | float |
DNase-seq_ENCSR000EOL |
DNase-seq ENCSR000EOL [biosample_summary="Homo sapiens kidney epithelial cell"]
|
 |
[0.334, 22.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11738707 | 0.36% | 67569 |
| chr1 | 1072098 | 0.43% | 6174 |
| chr2 | 999846 | 0.41% | 5750 |
| chr3 | 823888 | 0.42% | 4727 |
| chr4 | 647554 | 0.34% | 3805 |
| chr5 | 691887 | 0.38% | 3971 |
| chr6 | 727978 | 0.43% | 4231 |
| chr7 | 593683 | 0.37% | 3459 |
| chr8 | 572987 | 0.39% | 3327 |
| chr9 | 510190 | 0.37% | 2940 |
| chr10 | 567129 | 0.42% | 3277 |
| chr11 | 576803 | 0.43% | 3306 |
| chr12 | 576177 | 0.43% | 3270 |
| chr13 | 356224 | 0.31% | 2085 |
| chr14 | 365590 | 0.34% | 2088 |
| chr15 | 357438 | 0.35% | 2061 |
| chr16 | 345869 | 0.38% | 1991 |
| chr17 | 427428 | 0.51% | 2438 |
| chr18 | 281443 | 0.35% | 1647 |
| chr19 | 350074 | 0.60% | 1873 |
| chr20 | 287843 | 0.45% | 1658 |
| chr21 | 122606 | 0.26% | 700 |
| chr22 | 189230 | 0.37% | 1076 |
| chrX | 294582 | 0.19% | 1714 |
| chrY | 160 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 67569 | 7 | 640 | 173.73 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF964WGV.bed.gz | 712.47 KB | e1ff1901d70defbde3cc05f3dcc1160b |
| ENCFF964WGV.tabix.bed.gz | 630.5 KB | 85eb7272fcc071faefb7f362574a7ffd |
| ENCFF964WGV.tabix.bed.gz.tbi | 382.95 KB | 31013b33bba568ac3417e3fa916fb714 |
| genomic_resource.yaml | 2.39 KB | e261db1b09c6995330302d68b64aaf86 |
| statistics/ |