DNase-seq_ENCSR000EOL
DNase-seq ENCSR000EOL [biosample_summary="Homo sapiens kidney epithelial cell"]
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| Id: | DNase-seq/ENCSR000EOL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EOL [biosample_summary="Homo sapiens kidney epithelial cell"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Alignment file {ENCFF778EVH|/files/ENCFF778EVH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22656669 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF337FBC|/files/ENCFF337FBC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24095765 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOL | float |
DNase-seq_ENCSR000EOL |
DNase-seq ENCSR000EOL [biosample_summary="Homo sapiens kidney epithelial cell"]
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[0.334, 22.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF964WGV.bed.gz | 712.47 KB | e1ff1901d70defbde3cc05f3dcc1160b |
| ENCFF964WGV.bed.gz.dvc | 100.0 B | 5cfc31e84cba9053d8e6ad7a1e852f81 |
| ENCFF964WGV.tabix.bed.gz | 630.5 KB | 85eb7272fcc071faefb7f362574a7ffd |
| ENCFF964WGV.tabix.bed.gz.dvc | 106.0 B | ff3451cb96f413c89b465a3b60b351a2 |
| ENCFF964WGV.tabix.bed.gz.tbi | 382.95 KB | 31013b33bba568ac3417e3fa916fb714 |
| ENCFF964WGV.tabix.bed.gz.tbi.dvc | 110.0 B | 5340696305f64dab91cf6e9fbf202a73 |
| genomic_resource.yaml | 2.39 KB | e261db1b09c6995330302d68b64aaf86 |
| genomic_resource_original.yaml | 2.31 KB | b0d18952c8425370f7b95141de01a13e |
| statistics/ |