DNase-seq_ENCSR000EOJ
DNase-seq ENCSR000EOJ [biosample_summary="Homo sapiens fibroblast of lung"]
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| Id: | DNase-seq/ENCSR000EOJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EOJ [biosample_summary="Homo sapiens fibroblast of lung"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN849FAI|/analyses/ENCAN849FAI/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF453HHR|/files/ENCFF453HHR/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 41539039 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF876COX|/files/ENCFF876COX/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 41354711 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOJ | float |
DNase-seq_ENCSR000EOJ |
DNase-seq ENCSR000EOJ [biosample_summary="Homo sapiens fibroblast of lung"]
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[5, 1.47e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF016RJA.bed.gz | 2.81 MB | 0a6dbea2b83de80a4b877be582e3ec60 |
| ENCFF016RJA.bed.gz.dvc | 101.0 B | 2c78705b56360d57f113eb2d882ef7ac |
| ENCFF016RJA.tabix.bed.gz | 2.44 MB | 690dc94525f589d325a2924354eea4d4 |
| ENCFF016RJA.tabix.bed.gz.dvc | 107.0 B | d29315238cdf5a58703477fa00d18ee3 |
| ENCFF016RJA.tabix.bed.gz.tbi | 778.32 KB | fa05bb068ca55da528ed11dac99b96bb |
| ENCFF016RJA.tabix.bed.gz.tbi.dvc | 110.0 B | 01654c0873ee79bf3a0d7a5aac5eb1e6 |
| genomic_resource.yaml | 2.53 KB | 4ece4a4677d55752b3f6c16fa0c5ef4c |
| genomic_resource_original.yaml | 2.45 KB | a836f6bb67a4b1068b8e2f61d6dfc436 |
| statistics/ |