DNase-seq_ENCSR000EOH
DNase-seq ENCSR000EOH [biosample_summary="Homo sapiens fibroblast of pulmonary artery"]
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| Id: | DNase-seq/ENCSR000EOH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EOH [biosample_summary="Homo sapiens fibroblast of pulmonary artery"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN870OSI|/analyses/ENCAN870OSI/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF496CFW|/files/ENCFF496CFW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 30926431 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF981HHK|/files/ENCFF981HHK/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 30791885 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOH | float |
DNase-seq_ENCSR000EOH |
DNase-seq ENCSR000EOH [biosample_summary="Homo sapiens fibroblast of pulmonary artery"]
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[4, 1.36e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF781MSJ.bed.gz | 2.88 MB | 61fd67ccc6878d4c202b39f0e83e7a11 |
| ENCFF781MSJ.bed.gz.dvc | 101.0 B | 9884a78fbf3b5ae95b50a593151fe71a |
| ENCFF781MSJ.tabix.bed.gz | 2.5 MB | a0484663b8627a383e060a92bea5fb4f |
| ENCFF781MSJ.tabix.bed.gz.dvc | 107.0 B | 50bd7b6e0ea140f65f74e91a34707bb8 |
| ENCFF781MSJ.tabix.bed.gz.tbi | 799.19 KB | 23c78546a56d3e7a63e83d4d0f5956b9 |
| ENCFF781MSJ.tabix.bed.gz.tbi.dvc | 110.0 B | 8ad8e24fd5bf16eee1347d4ae80cc5f2 |
| genomic_resource.yaml | 2.57 KB | 0cfe06ab794aaab8f9d7294d0ba2bfc2 |
| genomic_resource_original.yaml | 2.48 KB | 8de0af17480e01a2fa8a6b6727176298 |
| statistics/ |