Resource
| Id | DNase-seq/ENCSR000EOH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EOH [biosample_summary="Homo sapiens fibroblast of pulmonary artery"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN870OSI|/analyses/ENCAN870OSI/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF496CFW|/files/ENCFF496CFW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 30926431 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF981HHK|/files/ENCFF981HHK/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 30791885 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOH | float |
DNase-seq_ENCSR000EOH |
DNase-seq ENCSR000EOH [biosample_summary="Homo sapiens fibroblast of pulmonary artery"]
|
 |
[4, 1.36e+05] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45665289 | 1.42% | 304098 |
| chr1 | 4060061 | 1.63% | 27044 |
| chr2 | 3818853 | 1.58% | 25426 |
| chr3 | 3143315 | 1.59% | 20934 |
| chr4 | 2708862 | 1.42% | 18028 |
| chr5 | 2712919 | 1.49% | 18065 |
| chr6 | 2868529 | 1.68% | 19103 |
| chr7 | 2344254 | 1.47% | 15615 |
| chr8 | 2216802 | 1.53% | 14765 |
| chr9 | 1922374 | 1.39% | 12802 |
| chr10 | 2158826 | 1.61% | 14378 |
| chr11 | 2228589 | 1.65% | 14845 |
| chr12 | 2235186 | 1.68% | 14879 |
| chr13 | 1403183 | 1.23% | 9335 |
| chr14 | 1438846 | 1.34% | 9583 |
| chr15 | 1462836 | 1.43% | 9747 |
| chr16 | 1210173 | 1.34% | 8063 |
| chr17 | 1673703 | 2.01% | 11153 |
| chr18 | 1131016 | 1.41% | 7533 |
| chr19 | 1140852 | 1.95% | 7602 |
| chr20 | 1071977 | 1.66% | 7135 |
| chr21 | 517001 | 1.11% | 3445 |
| chr22 | 694598 | 1.37% | 4625 |
| chrX | 1430084 | 0.92% | 9513 |
| chrY | 72450 | 0.13% | 480 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 304098 | 33 | 450 | 150.17 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF781MSJ.bed.gz | 2.88 MB | 61fd67ccc6878d4c202b39f0e83e7a11 |
| ENCFF781MSJ.tabix.bed.gz | 2.5 MB | a0484663b8627a383e060a92bea5fb4f |
| ENCFF781MSJ.tabix.bed.gz.tbi | 799.19 KB | 23c78546a56d3e7a63e83d4d0f5956b9 |
| genomic_resource.yaml | 2.57 KB | 0cfe06ab794aaab8f9d7294d0ba2bfc2 |
| statistics/ |