DNase-seq_ENCSR000EOF
DNase-seq ENCSR000EOF [biosample_summary="Homo sapiens non-pigmented ciliary epithelial cell"]
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| Id: | DNase-seq/ENCSR000EOF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EOF [biosample_summary="Homo sapiens non-pigmented ciliary epithelial cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN622TCM|/analyses/ENCAN622TCM/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF613MGD|/files/ENCFF613MGD/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 30586736 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF997VPL|/files/ENCFF997VPL/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 30196009 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF644BXG|/files/ENCFF644BXG/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 30025065 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF188SZW|/files/ENCFF188SZW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 30456089 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOF | float |
DNase-seq_ENCSR000EOF |
DNase-seq ENCSR000EOF [biosample_summary="Homo sapiens non-pigmented ciliary epithelial cell"]
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[2, 3.78e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF240YXY.bed.gz | 1.06 MB | 1a93f7f957d3ef657572b55102afa266 |
| ENCFF240YXY.bed.gz.dvc | 101.0 B | af2cf21331628496ba8d253d1965bb3d |
| ENCFF240YXY.tabix.bed.gz | 937.57 KB | 1e5a5e7d740017d0e929a1f76f874787 |
| ENCFF240YXY.tabix.bed.gz.dvc | 106.0 B | 174f32212e789d029437f27ad504a761 |
| ENCFF240YXY.tabix.bed.gz.tbi | 529.64 KB | 4032d3ca8e47bbd3e707fe4a13ee8075 |
| ENCFF240YXY.tabix.bed.gz.tbi.dvc | 110.0 B | 4834fd8ceb0490c717f5c0e40efa7e76 |
| genomic_resource.yaml | 3.83 KB | 507f609f926299d7cbe8acff087956e8 |
| genomic_resource_original.yaml | 3.73 KB | aac8865e0f7cba2db06d6d17e131b69d |
| statistics/ |