DNase-seq_ENCSR000EOE
DNase-seq ENCSR000EOE [biosample_summary="Homo sapiens lung microvascular endothelial cell female"]
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| Id: | DNase-seq/ENCSR000EOE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EOE [biosample_summary="Homo sapiens lung microvascular endothelial cell female"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female output_type: peaks audit_internal_action: Archived analysis {ENCAN087XKN|/analyses/ENCAN087XKN/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF507SVX|/files/ENCFF507SVX/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 38907616 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOE | float |
DNase-seq_ENCSR000EOE |
DNase-seq ENCSR000EOE [biosample_summary="Homo sapiens lung microvascular endothelial cell female"]
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[2, 3.32e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF058QAN.bed.gz | 2.22 MB | b286cc773d2f50811e570137c522c532 |
| ENCFF058QAN.bed.gz.dvc | 101.0 B | 10e2d650b0ff29d15ccf7062e624aa1d |
| ENCFF058QAN.tabix.bed.gz | 1.93 MB | 71a4376ae68a65707cd1251366135389 |
| ENCFF058QAN.tabix.bed.gz.dvc | 107.0 B | 8e4062aa28f8e9d2d7aca9852f296ccf |
| ENCFF058QAN.tabix.bed.gz.tbi | 652.32 KB | ee699141157110d6fe414e4329f200f9 |
| ENCFF058QAN.tabix.bed.gz.tbi.dvc | 110.0 B | 21477eeede3cc921ad63ec3fa382d01c |
| genomic_resource.yaml | 1.96 KB | 1e514759dddd0d3809f2a68a33bd2e95 |
| genomic_resource_original.yaml | 1.86 KB | 86e5a4c920c4e86cdaf97a6c0241334d |
| statistics/ |