Resource

Id DNase-seq/ENCSR000EOEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EOE [biosample_summary="Homo sapiens lung microvascular endothelial cell female"]
Description
Labels
  • accession: ENCSR000EOE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000016/
  • biosample_summary: Homo sapiens lung microvascular endothelial cell female
  • date_created: 2013-12-12T07:09:11.518301+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EOE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EOE float

DNase-seq_ENCSR000EOE
DNase-seq ENCSR000EOE [biosample_summary="Homo sapiens lung microvascular endothelial cell female"]
 HISTOGRAM FOR DNase-seq_ENCSR000EOE [2, 3.32e+05]
n
34,715,832
mean
494
sd
1.32e+03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 347158321.08% 231230
chr1 3144500 1.26% 20950
chr2 2728026 1.13% 18171
chr3 2303040 1.16% 15337
chr4 1777746 0.93% 11841
chr5 1970979 1.09% 13134
chr6 2143672 1.26% 14276
chr7 1813060 1.14% 12077
chr8 1573605 1.08% 10478
chr9 1507028 1.09% 10037
chr10 1730428 1.29% 11525
chr11 1636790 1.21% 10902
chr12 1735629 1.30% 11560
chr13 962332 0.84% 6410
chr14 1087801 1.02% 7246
chr15 1134027 1.11% 7556
chr16 1096129 1.21% 7294
chr17 1444213 1.73% 9619
chr18 799444 0.99% 5323
chr19 1131436 1.93% 7542
chr20 901847 1.40% 6004
chr21 378445 0.81% 2520
chr22 663850 1.31% 4424
chrX 1039505 0.67% 6923
chrY 12300 0.02% 81
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 231230 15 337 150.14 150
global segment-length histogram

Files

Filename Size md5
ENCFF058QAN.bed.gz 2.22 MB b286cc773d2f50811e570137c522c532
ENCFF058QAN.tabix.bed.gz 1.93 MB 71a4376ae68a65707cd1251366135389
ENCFF058QAN.tabix.bed.gz.tbi 652.32 KB ee699141157110d6fe414e4329f200f9
genomic_resource.yaml 1.96 KB 1e514759dddd0d3809f2a68a33bd2e95
statistics/