DNase-seq_ENCSR000EOD
DNase-seq ENCSR000EOD [biosample_summary="Homo sapiens lung microvascular endothelial cell female"]
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| Id: | DNase-seq/ENCSR000EOD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EOD [biosample_summary="Homo sapiens lung microvascular endothelial cell female"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female output_type: peaks audit_warning: Alignment file {ENCFF422FJC|/files/ENCFF422FJC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 41582403 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOD | float |
DNase-seq_ENCSR000EOD |
DNase-seq ENCSR000EOD [biosample_summary="Homo sapiens lung microvascular endothelial cell female"]
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[0.0226, 40.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF622EPU.bed.gz | 2.16 MB | 3a6c1e16df1993fd76d10019ec67507d |
| ENCFF622EPU.bed.gz.dvc | 101.0 B | 3063aaf92cda90b9274cfbadf51880ca |
| ENCFF622EPU.tabix.bed.gz | 1.98 MB | 159a36a68f09eff7d585074f3fd971f9 |
| ENCFF622EPU.tabix.bed.gz.dvc | 107.0 B | f87af1f5a8fa4e849c99cd3c61d58f99 |
| ENCFF622EPU.tabix.bed.gz.tbi | 572.2 KB | d50f3b52bec4af0b24899443fdffa890 |
| ENCFF622EPU.tabix.bed.gz.tbi.dvc | 110.0 B | a059357c2dc8606ff6ccdeb1ff8c3d85 |
| genomic_resource.yaml | 1.8 KB | 1d2be486108a1ae561c8c9736c8689ef |
| genomic_resource_original.yaml | 1.7 KB | 52bf75e385361074cee710ee983839ef |
| statistics/ |