Resource

Id DNase-seq/ENCSR000EOCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EOC [biosample_summary="Homo sapiens dermis blood vessel endothelial cell male newborn"]
Description
Labels
  • accession: ENCSR000EOC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000010/
  • biosample_summary: Homo sapiens dermis blood vessel endothelial cell male newborn
  • date_created: 2013-12-12T07:09:08.949047+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EOC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EOC float

DNase-seq_ENCSR000EOC
DNase-seq ENCSR000EOC [biosample_summary="Homo sapiens dermis blood vessel endothelial cell male newborn"]
 HISTOGRAM FOR DNase-seq_ENCSR000EOC [2, 5.59e+03]
n
15,388,612
mean
88.9
sd
125

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 153886120.48% 102472
chr1 1419243 0.57% 9452
chr2 1201200 0.50% 7998
chr3 1014410 0.51% 6748
chr4 761047 0.40% 5063
chr5 851400 0.47% 5666
chr6 955035 0.56% 6364
chr7 797564 0.50% 5313
chr8 697278 0.48% 4645
chr9 643720 0.47% 4285
chr10 739800 0.55% 4926
chr11 746844 0.55% 4976
chr12 794151 0.60% 5291
chr13 415950 0.36% 2768
chr14 478950 0.45% 3188
chr15 522450 0.51% 3478
chr16 500332 0.55% 3331
chr17 652486 0.78% 4344
chr18 334163 0.42% 2226
chr19 570781 0.97% 3805
chr20 407388 0.63% 2714
chr21 177338 0.38% 1180
chr22 288582 0.57% 1923
chrX 399000 0.26% 2658
chrY 19500 0.03% 130
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 102472 31 393 150.17 150
global segment-length histogram

Files

Filename Size md5
ENCFF823QRP.bed.gz 994.62 KB b5311b855fa22dc3644033725ad34e20
ENCFF823QRP.tabix.bed.gz 861.49 KB ad53de979d3fd7b4330b2d5ad7918f3a
ENCFF823QRP.tabix.bed.gz.tbi 458.95 KB 3000a2b7779d37ab0e0c4a8d0da64cde
genomic_resource.yaml 1.4 KB 550ea45e01bc54c2d56347e5f6d809bd
statistics/