Resource
| Id | DNase-seq/ENCSR000EOA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EOA [biosample_summary="Homo sapiens dermis microvascular lymphatic vessel endothelial cell female"] |
| Description |
status: released biological_replicates: Rep 1 summary: female output_type: peaks audit_warning: Alignment file {ENCFF750AZP|/files/ENCFF750AZP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 34306457 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF937FTE|/files/ENCFF937FTE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 32601643 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOA | float |
DNase-seq_ENCSR000EOA |
DNase-seq ENCSR000EOA [biosample_summary="Homo sapiens dermis microvascular lymphatic vessel endothelial cell female"]
|
 |
[0.217, 66.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13722798 | 0.43% | 77903 |
| chr1 | 1269108 | 0.51% | 7206 |
| chr2 | 1045834 | 0.43% | 5946 |
| chr3 | 903527 | 0.46% | 5141 |
| chr4 | 655556 | 0.34% | 3758 |
| chr5 | 748554 | 0.41% | 4281 |
| chr6 | 851391 | 0.50% | 4836 |
| chr7 | 688119 | 0.43% | 3939 |
| chr8 | 615010 | 0.42% | 3493 |
| chr9 | 564045 | 0.41% | 3209 |
| chr10 | 686747 | 0.51% | 3900 |
| chr11 | 657942 | 0.49% | 3743 |
| chr12 | 696344 | 0.52% | 3968 |
| chr13 | 374410 | 0.33% | 2093 |
| chr14 | 423558 | 0.40% | 2406 |
| chr15 | 462726 | 0.45% | 2616 |
| chr16 | 465073 | 0.51% | 2625 |
| chr17 | 608840 | 0.73% | 3427 |
| chr18 | 297013 | 0.37% | 1690 |
| chr19 | 530268 | 0.90% | 2920 |
| chr20 | 377740 | 0.59% | 2124 |
| chr21 | 154461 | 0.33% | 873 |
| chr22 | 258718 | 0.51% | 1461 |
| chrX | 387412 | 0.25% | 2245 |
| chrY | 402 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 77903 | 4 | 680 | 176.15 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF242PPW.bed.gz | 836.36 KB | cfa7b0fd7c71aef1ed4fdf0f48c10bfa |
| ENCFF242PPW.tabix.bed.gz | 755.06 KB | d3d7bd0e22ddc4e4c42adae4fc737f85 |
| ENCFF242PPW.tabix.bed.gz.tbi | 381.6 KB | 0bc2386a26e5e9db5bbdddaae2d0e09a |
| genomic_resource.yaml | 2.48 KB | 5d79de46fbc3553549d577ac906e189f |
| statistics/ |