DNase-seq_ENCSR000EOA
DNase-seq ENCSR000EOA [biosample_summary="Homo sapiens dermis microvascular lymphatic vessel endothelial cell female"]
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| Id: | DNase-seq/ENCSR000EOA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EOA [biosample_summary="Homo sapiens dermis microvascular lymphatic vessel endothelial cell female"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female output_type: peaks audit_warning: Alignment file {ENCFF750AZP|/files/ENCFF750AZP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 34306457 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF937FTE|/files/ENCFF937FTE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 32601643 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EOA | float |
DNase-seq_ENCSR000EOA |
DNase-seq ENCSR000EOA [biosample_summary="Homo sapiens dermis microvascular lymphatic vessel endothelial cell female"]
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[0.217, 66.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF242PPW.bed.gz | 836.36 KB | cfa7b0fd7c71aef1ed4fdf0f48c10bfa |
| ENCFF242PPW.bed.gz.dvc | 100.0 B | d96340442d52596c5582e6f34e95ff59 |
| ENCFF242PPW.tabix.bed.gz | 755.06 KB | d3d7bd0e22ddc4e4c42adae4fc737f85 |
| ENCFF242PPW.tabix.bed.gz.dvc | 106.0 B | a60f73350ad6c41f785a97f7c0805115 |
| ENCFF242PPW.tabix.bed.gz.tbi | 381.6 KB | 0bc2386a26e5e9db5bbdddaae2d0e09a |
| ENCFF242PPW.tabix.bed.gz.tbi.dvc | 110.0 B | cb9323a31aca24c89e0438abd66fa616 |
| genomic_resource.yaml | 2.48 KB | 5d79de46fbc3553549d577ac906e189f |
| genomic_resource_original.yaml | 2.37 KB | 08c1eed7e11a0862b316111a55b3482e |
| statistics/ |