Resource
| Id | DNase-seq/ENCSR000ENY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ENY [biosample_summary="Homo sapiens dermis blood vessel endothelial cell female adult"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult output_type: peaks audit_internal_action: Archived analysis {ENCAN669FHR|/analyses/ENCAN669FHR/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF490NJA|/files/ENCFF490NJA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 45684134 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF200WYL|/files/ENCFF200WYL/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 45469809 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENY | float |
DNase-seq_ENCSR000ENY |
DNase-seq ENCSR000ENY [biosample_summary="Homo sapiens dermis blood vessel endothelial cell female adult"]
|
 |
[1, 8.91e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38387130 | 1.19% | 255609 |
| chr1 | 3513802 | 1.41% | 23395 |
| chr2 | 3121357 | 1.29% | 20787 |
| chr3 | 2615661 | 1.32% | 17422 |
| chr4 | 2000590 | 1.05% | 13320 |
| chr5 | 2156111 | 1.19% | 14348 |
| chr6 | 2413433 | 1.41% | 16068 |
| chr7 | 2021804 | 1.27% | 13467 |
| chr8 | 1774991 | 1.22% | 11816 |
| chr9 | 1631082 | 1.18% | 10862 |
| chr10 | 1835241 | 1.37% | 12222 |
| chr11 | 1852358 | 1.37% | 12336 |
| chr12 | 1950150 | 1.46% | 12988 |
| chr13 | 1092625 | 0.96% | 7273 |
| chr14 | 1205096 | 1.13% | 8022 |
| chr15 | 1284536 | 1.26% | 8556 |
| chr16 | 1127967 | 1.25% | 7510 |
| chr17 | 1509493 | 1.81% | 10052 |
| chr18 | 879600 | 1.09% | 5858 |
| chr19 | 1088573 | 1.86% | 7250 |
| chr20 | 980377 | 1.52% | 6529 |
| chr21 | 425524 | 0.91% | 2836 |
| chr22 | 642661 | 1.26% | 4280 |
| chrX | 1253298 | 0.80% | 8340 |
| chrY | 10800 | 0.02% | 72 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 255609 | 25 | 450 | 150.18 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF894ZLD.bed.gz | 2.43 MB | 7b02a7e4136c561bebd5c34c48648a4a |
| ENCFF894ZLD.tabix.bed.gz | 2.11 MB | f059870014bc8a6435039c5987a74dc6 |
| ENCFF894ZLD.tabix.bed.gz.tbi | 702.41 KB | 023bc9ceed080d85c98c5b84ba7c26a5 |
| genomic_resource.yaml | 2.59 KB | 58d920d6d1fbebbd98c7f205e335d306 |
| statistics/ |