Resource
| Id | DNase-seq/ENCSR000ENU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ENU [biosample_summary="Homo sapiens HL-60"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF331FHB|/files/ENCFF331FHB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31481732 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF508CUD|/files/ENCFF508CUD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30139846 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENU | float |
DNase-seq_ENCSR000ENU |
DNase-seq ENCSR000ENU [biosample_summary="Homo sapiens HL-60"]
|
 |
[0.256, 155] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 12847382 | 0.40% | 67741 |
| chr1 | 1293251 | 0.52% | 6821 |
| chr2 | 986986 | 0.41% | 5325 |
| chr3 | 781517 | 0.39% | 4246 |
| chr4 | 504455 | 0.27% | 2789 |
| chr5 | 536800 | 0.30% | 2913 |
| chr6 | 729213 | 0.43% | 3894 |
| chr7 | 597572 | 0.38% | 3199 |
| chr8 | 684412 | 0.47% | 3502 |
| chr9 | 527881 | 0.38% | 2795 |
| chr10 | 537918 | 0.40% | 2912 |
| chr11 | 693266 | 0.51% | 3567 |
| chr12 | 628947 | 0.47% | 3347 |
| chr13 | 300277 | 0.26% | 1660 |
| chr14 | 370805 | 0.35% | 1984 |
| chr15 | 428017 | 0.42% | 2297 |
| chr16 | 505739 | 0.56% | 2579 |
| chr17 | 624652 | 0.75% | 3113 |
| chr18 | 289971 | 0.36% | 1619 |
| chr19 | 666818 | 1.14% | 3152 |
| chr20 | 396515 | 0.62% | 2077 |
| chr21 | 145602 | 0.31% | 765 |
| chr22 | 296112 | 0.58% | 1486 |
| chrX | 320219 | 0.21% | 1696 |
| chrY | 437 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 67741 | 4 | 1020 | 189.65 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF720XRL.bed.gz | 721.85 KB | 5c21247a72abdd9193fa1b4436c83f4d |
| ENCFF720XRL.tabix.bed.gz | 648.64 KB | 17933da644736c07d0fdae4156edeedd |
| ENCFF720XRL.tabix.bed.gz.tbi | 316.53 KB | 807d86f825b9eec74858d51293a6d1a9 |
| genomic_resource.yaml | 2.34 KB | f6777addccbb66b4a5e9746d89b64d92 |
| statistics/ |