DNase-seq_ENCSR000ENU
DNase-seq ENCSR000ENU [biosample_summary="Homo sapiens HL-60"]
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| Id: | DNase-seq/ENCSR000ENU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ENU [biosample_summary="Homo sapiens HL-60"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF331FHB|/files/ENCFF331FHB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31481732 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF508CUD|/files/ENCFF508CUD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30139846 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENU | float |
DNase-seq_ENCSR000ENU |
DNase-seq ENCSR000ENU [biosample_summary="Homo sapiens HL-60"]
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[0.256, 155] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF720XRL.bed.gz | 721.85 KB | 5c21247a72abdd9193fa1b4436c83f4d |
| ENCFF720XRL.bed.gz.dvc | 100.0 B | 20170c057f48ec448728b48ce79f592d |
| ENCFF720XRL.tabix.bed.gz | 648.64 KB | 17933da644736c07d0fdae4156edeedd |
| ENCFF720XRL.tabix.bed.gz.dvc | 106.0 B | a0cc76374931c10018745ddc749d9596 |
| ENCFF720XRL.tabix.bed.gz.tbi | 316.53 KB | 807d86f825b9eec74858d51293a6d1a9 |
| ENCFF720XRL.tabix.bed.gz.tbi.dvc | 110.0 B | 96c93b39825c581f2e4e5d68ca193435 |
| genomic_resource.yaml | 2.34 KB | f6777addccbb66b4a5e9746d89b64d92 |
| genomic_resource_original.yaml | 2.27 KB | 98f3c726e0a3effa2dc7cf50ab8924c2 |
| statistics/ |