| Id: | DNase-seq/ENCSR000ENT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ENT [biosample_summary="Homo sapiens iris pigment epithelial cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF420XBG|/files/ENCFF420XBG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 33802924 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENT | float |
DNase-seq_ENCSR000ENT |
DNase-seq ENCSR000ENT [biosample_summary="Homo sapiens iris pigment epithelial cell"]
|
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[0.039, 23.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF335XZR.bed.gz | 2.88 MB | e1fbb72c594dedd5511ef4b7064f67d0 |
| ENCFF335XZR.bed.gz.dvc | 101.0 B | 6cd6adc7df1fd40c7140d373242d44cf |
| ENCFF335XZR.tabix.bed.gz | 2.63 MB | f65045fc66af96c75d9707c56ee6e8c5 |
| ENCFF335XZR.tabix.bed.gz.dvc | 107.0 B | 302973a7cf5fdf9ae8162553277bf72f |
| ENCFF335XZR.tabix.bed.gz.tbi | 732.76 KB | 4c8b302740003bb1d0ed3e24897d18ff |
| ENCFF335XZR.tabix.bed.gz.tbi.dvc | 110.0 B | 3eca04b34bd0b335a65e01514e3f61d0 |
| genomic_resource.yaml | 1.91 KB | 189508a464b2e54fcc1c52faa2341768 |
| genomic_resource_original.yaml | 1.82 KB | b494a8ba1ab7d1137a92b7ade46a6e2c |
| statistics/ |