| Id: | DNase-seq/ENCSR000ENS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ENS [biosample_summary="Homo sapiens fibroblast of gingiva"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF887FPE|/files/ENCFF887FPE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22259442 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENS | float |
DNase-seq_ENCSR000ENS |
DNase-seq ENCSR000ENS [biosample_summary="Homo sapiens fibroblast of gingiva"]
|
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[0.0277, 49.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF861IVZ.bed.gz | 2.09 MB | ee9b3a7850d42eacd00cf20751b33976 |
| ENCFF861IVZ.bed.gz.dvc | 101.0 B | 5231c1b0daa970c3b2b35aa35756c1cb |
| ENCFF861IVZ.tabix.bed.gz | 1.9 MB | 004a2bcff65816291b8d3124c7750735 |
| ENCFF861IVZ.tabix.bed.gz.dvc | 107.0 B | 26860c0e992d01d9aeb0a85ae4efa985 |
| ENCFF861IVZ.tabix.bed.gz.tbi | 599.36 KB | 79455056e3b560ddca0afecd0917a7a9 |
| ENCFF861IVZ.tabix.bed.gz.tbi.dvc | 110.0 B | 5cfa8cca684b4360f0ea330b62f3c5a9 |
| genomic_resource.yaml | 1.75 KB | 90830c54ca500cd2f6422994fd82fadd |
| genomic_resource_original.yaml | 1.66 KB | 7935940ba8b89d5686f38efe4b678250 |
| statistics/ |