Resource

Id DNase-seq/ENCSR000ENRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ENR [biosample_summary="Homo sapiens HFF-Myc originated from foreskin fibroblast"]
Description
Labels
  • accession: ENCSR000ENR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005710/
  • biosample_summary: Homo sapiens HFF-Myc originated from foreskin fibroblast
  • date_created: 2013-12-12T07:08:55.960887+00:00
  • date_released: 2011-05-04
  • doi: 10.17989/ENCSR000ENR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ENR float

DNase-seq_ENCSR000ENR

DNase-seq ENCSR000ENR [biosample_summary="Homo sapiens HFF-Myc originated from foreskin fibroblast"]
HISTOGRAM FOR DNase-seq_ENCSR000ENR [0.276, 26.7]
n
12,002,340
mean
3.07
sd
2.49

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 120023400.37% 66499
chr1 1151410 0.46% 6382
chr2 985132 0.41% 5476
chr3 827519 0.42% 4602
chr4 598973 0.31% 3369
chr5 699017 0.39% 3857
chr6 778285 0.46% 4312
chr7 587256 0.37% 3260
chr8 559187 0.39% 3110
chr9 508618 0.37% 2821
chr10 561817 0.42% 3137
chr11 608164 0.45% 3306
chr12 628757 0.47% 3491
chr13 310218 0.27% 1742
chr14 372612 0.35% 2072
chr15 387477 0.38% 2156
chr16 365641 0.40% 2016
chr17 482209 0.58% 2614
chr18 270515 0.34% 1534
chr19 406473 0.69% 2136
chr20 304143 0.47% 1678
chr21 141197 0.30% 786
chr22 192350 0.38% 1075
chrX 264481 0.17% 1502
chrY 10889 0.02% 65
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66499 4 740 180.49 180
global segment-length histogram

Files

Filename Size md5
ENCFF030SHD.bed.gz 709.39 KB e15cf8cfdeb4c38951fd3f4cae8189cd
ENCFF030SHD.tabix.bed.gz 628.05 KB 0c46b4af605d1d9e4b6fbcd44eb5f206
ENCFF030SHD.tabix.bed.gz.tbi 367.46 KB cef74f5add364da10e38767f1450c423
genomic_resource.yaml 2.45 KB b4a5458572fb2f101976ddd425930e39
statistics/