Resource
| Id | DNase-seq/ENCSR000ENR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ENR [biosample_summary="Homo sapiens HFF-Myc originated from foreskin fibroblast"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_error: Alignment file {ENCFF992SGG|/files/ENCFF992SGG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 19550895 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF988KRZ|/files/ENCFF988KRZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 29170145 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENR | float |
DNase-seq_ENCSR000ENR |
DNase-seq ENCSR000ENR [biosample_summary="Homo sapiens HFF-Myc originated from foreskin fibroblast"]
|
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[0.276, 26.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 12002340 | 0.37% | 66499 |
| chr1 | 1151410 | 0.46% | 6382 |
| chr2 | 985132 | 0.41% | 5476 |
| chr3 | 827519 | 0.42% | 4602 |
| chr4 | 598973 | 0.31% | 3369 |
| chr5 | 699017 | 0.39% | 3857 |
| chr6 | 778285 | 0.46% | 4312 |
| chr7 | 587256 | 0.37% | 3260 |
| chr8 | 559187 | 0.39% | 3110 |
| chr9 | 508618 | 0.37% | 2821 |
| chr10 | 561817 | 0.42% | 3137 |
| chr11 | 608164 | 0.45% | 3306 |
| chr12 | 628757 | 0.47% | 3491 |
| chr13 | 310218 | 0.27% | 1742 |
| chr14 | 372612 | 0.35% | 2072 |
| chr15 | 387477 | 0.38% | 2156 |
| chr16 | 365641 | 0.40% | 2016 |
| chr17 | 482209 | 0.58% | 2614 |
| chr18 | 270515 | 0.34% | 1534 |
| chr19 | 406473 | 0.69% | 2136 |
| chr20 | 304143 | 0.47% | 1678 |
| chr21 | 141197 | 0.30% | 786 |
| chr22 | 192350 | 0.38% | 1075 |
| chrX | 264481 | 0.17% | 1502 |
| chrY | 10889 | 0.02% | 65 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 66499 | 4 | 740 | 180.49 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF030SHD.bed.gz | 709.39 KB | e15cf8cfdeb4c38951fd3f4cae8189cd |
| ENCFF030SHD.tabix.bed.gz | 628.05 KB | 0c46b4af605d1d9e4b6fbcd44eb5f206 |
| ENCFF030SHD.tabix.bed.gz.tbi | 367.46 KB | cef74f5add364da10e38767f1450c423 |
| genomic_resource.yaml | 2.45 KB | b4a5458572fb2f101976ddd425930e39 |
| statistics/ |
