Resource
| Id | DNase-seq/ENCSR000ENQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ENQ [biosample_summary="Homo sapiens foreskin fibroblast male newborn"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: peaks audit_internal_action: Archived analysis {ENCAN648NWQ|/analyses/ENCAN648NWQ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENQ | float |
DNase-seq_ENCSR000ENQ |
DNase-seq ENCSR000ENQ [biosample_summary="Homo sapiens foreskin fibroblast male newborn"]
|
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[6, 5.46e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 43434525 | 1.35% | 289313 |
| chr1 | 4035124 | 1.62% | 26871 |
| chr2 | 3645004 | 1.50% | 24282 |
| chr3 | 2959007 | 1.49% | 19718 |
| chr4 | 2300524 | 1.21% | 15318 |
| chr5 | 2558714 | 1.41% | 17041 |
| chr6 | 2660687 | 1.56% | 17719 |
| chr7 | 2181692 | 1.37% | 14532 |
| chr8 | 2071231 | 1.43% | 13797 |
| chr9 | 1831060 | 1.32% | 12199 |
| chr10 | 2068328 | 1.55% | 13782 |
| chr11 | 2123463 | 1.57% | 14149 |
| chr12 | 2194449 | 1.65% | 14622 |
| chr13 | 1222749 | 1.07% | 8144 |
| chr14 | 1326667 | 1.24% | 8831 |
| chr15 | 1413892 | 1.39% | 9421 |
| chr16 | 1309451 | 1.45% | 8719 |
| chr17 | 1703990 | 2.05% | 11356 |
| chr18 | 996047 | 1.24% | 6635 |
| chr19 | 1189332 | 2.03% | 7919 |
| chr20 | 1080076 | 1.68% | 7195 |
| chr21 | 522860 | 1.12% | 3482 |
| chr22 | 696753 | 1.37% | 4639 |
| chrX | 1265425 | 0.81% | 8424 |
| chrY | 78000 | 0.14% | 518 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 289313 | 33 | 449 | 150.13 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF090PQC.bed.gz | 2.75 MB | 65c8c628171e5ec611d48f64167a8367 |
| ENCFF090PQC.tabix.bed.gz | 2.39 MB | 9bea2391d1a8fa8906f3f6749f99ace2 |
| ENCFF090PQC.tabix.bed.gz.tbi | 751.49 KB | 3fae88d9421669ae96f94557973c8a5e |
| genomic_resource.yaml | 1.35 KB | 01ad2e13456220a5ab0b1f6fe48be77e |
| statistics/ |
