DNase-seq_ENCSR000ENO
DNase-seq ENCSR000ENO [biosample_summary="Homo sapiens HeLa-S3 G1b phase"]
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| Id: | DNase-seq/ENCSR000ENO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ENO [biosample_summary="Homo sapiens HeLa-S3 G1b phase"] |
| Description: |
status: released biological_replicates: Rep 1 summary: G1b phase output_type: peaks audit_warning: Alignment file {ENCFF470DIH|/files/ENCFF470DIH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 25845324 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF754ANZ|/files/ENCFF754ANZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 23352509 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENO | float |
DNase-seq_ENCSR000ENO |
DNase-seq ENCSR000ENO [biosample_summary="Homo sapiens HeLa-S3 G1b phase"]
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[0.312, 74.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF731FLF.bed.gz | 567.89 KB | a0019c21ef473848ce359297ac247c8a |
| ENCFF731FLF.bed.gz.dvc | 100.0 B | ba8236f2a18598cebdd244db9358dd3e |
| ENCFF731FLF.tabix.bed.gz | 510.75 KB | df4c19d66061003cd3ffa79c7b1196bf |
| ENCFF731FLF.tabix.bed.gz.dvc | 106.0 B | e390fa3c86254923b991a156189addfa |
| ENCFF731FLF.tabix.bed.gz.tbi | 282.2 KB | 8a1eadcd6053e99592b2ce66bb44fa76 |
| ENCFF731FLF.tabix.bed.gz.tbi.dvc | 110.0 B | ed40a20b98056a14ad8f03a363ac76e4 |
| genomic_resource.yaml | 2.35 KB | 4b329565e9bd65892c47fde0232e0d73 |
| genomic_resource_original.yaml | 2.27 KB | 699eb83c67e70034c28b135d4870ee51 |
| statistics/ |