Resource

Id DNase-seq/ENCSR000ENOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ENO [biosample_summary="Homo sapiens HeLa-S3 G1b phase"]
Description
Labels
  • accession: ENCSR000ENO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002791/
  • biosample_summary: Homo sapiens HeLa-S3 G1b phase
  • date_created: 2013-12-12T07:08:51.605435+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000ENO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: G1b phase
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ENO float

DNase-seq_ENCSR000ENO
DNase-seq ENCSR000ENO [biosample_summary="Homo sapiens HeLa-S3 G1b phase"]
 HISTOGRAM FOR DNase-seq_ENCSR000ENO [0.312, 74.5]
n
10,762,256
mean
4.1
sd
3.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 107622560.33% 53393
chr1 1118793 0.45% 5494
chr2 764168 0.32% 3864
chr3 769986 0.39% 3800
chr4 454199 0.24% 2263
chr5 711855 0.39% 3475
chr6 635892 0.37% 3136
chr7 566086 0.36% 2842
chr8 512049 0.35% 2527
chr9 463812 0.34% 2278
chr10 474554 0.35% 2381
chr11 556033 0.41% 2758
chr12 569537 0.43% 2822
chr13 263542 0.23% 1320
chr14 345927 0.32% 1711
chr15 385478 0.38% 1904
chr16 325264 0.36% 1610
chr17 421227 0.51% 2122
chr18 247614 0.31% 1217
chr19 339557 0.58% 1673
chr20 260706 0.40% 1298
chr21 124321 0.27% 622
chr22 116322 0.23% 613
chrX 335054 0.21% 1661
chrY 280 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53393 3 820 201.57 200
global segment-length histogram

Files

Filename Size md5
ENCFF731FLF.bed.gz 567.89 KB a0019c21ef473848ce359297ac247c8a
ENCFF731FLF.tabix.bed.gz 510.75 KB df4c19d66061003cd3ffa79c7b1196bf
ENCFF731FLF.tabix.bed.gz.tbi 282.2 KB 8a1eadcd6053e99592b2ce66bb44fa76
genomic_resource.yaml 2.35 KB 4b329565e9bd65892c47fde0232e0d73
statistics/