Resource
| Id | DNase-seq/ENCSR000ENN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ENN [biosample_summary="Homo sapiens epithelial cell of esophagus"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF072SED|/files/ENCFF072SED/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 25580216 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENN | float |
DNase-seq_ENCSR000ENN |
DNase-seq ENCSR000ENN [biosample_summary="Homo sapiens epithelial cell of esophagus"]
|
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[0.0273, 20.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53198070 | 1.65% | 297127 |
| chr1 | 4891030 | 1.96% | 27166 |
| chr2 | 4403785 | 1.82% | 24672 |
| chr3 | 3673638 | 1.85% | 20561 |
| chr4 | 3154019 | 1.66% | 17887 |
| chr5 | 3151189 | 1.74% | 17704 |
| chr6 | 3384692 | 1.98% | 18830 |
| chr7 | 2635878 | 1.65% | 14864 |
| chr8 | 2553842 | 1.76% | 14301 |
| chr9 | 2242701 | 1.62% | 12537 |
| chr10 | 2451584 | 1.83% | 13732 |
| chr11 | 2591266 | 1.92% | 14437 |
| chr12 | 2610811 | 1.96% | 14558 |
| chr13 | 1587761 | 1.39% | 8973 |
| chr14 | 1627184 | 1.52% | 9062 |
| chr15 | 1684517 | 1.65% | 9364 |
| chr16 | 1475767 | 1.63% | 8123 |
| chr17 | 1915736 | 2.30% | 10493 |
| chr18 | 1294063 | 1.61% | 7251 |
| chr19 | 1348755 | 2.30% | 7270 |
| chr20 | 1302239 | 2.02% | 7178 |
| chr21 | 584506 | 1.25% | 3258 |
| chr22 | 773355 | 1.52% | 4279 |
| chrX | 1725833 | 1.11% | 9847 |
| chrY | 133919 | 0.23% | 780 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 297127 | 2 | 840 | 179.04 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF722AWL.bed.gz | 3.19 MB | 430be9c4ba4d28140d1c61df5678734a |
| ENCFF722AWL.tabix.bed.gz | 2.91 MB | 523e37788a163c880551748bb00851a1 |
| ENCFF722AWL.tabix.bed.gz.tbi | 803.54 KB | 93e8a3d99c1ed762b33ec8fc44cff410 |
| genomic_resource.yaml | 1.76 KB | cd53c58238de079a89e8d3449b16c33e |
| statistics/ |
