Resource

Id DNase-seq/ENCSR000ENLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ENL [biosample_summary="Homo sapiens choroid plexus epithelial cell"]
Description
Labels
  • accession: ENCSR000ENL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000706/
  • biosample_summary: Homo sapiens choroid plexus epithelial cell
  • date_created: 2013-12-18T17:58:32.190117+00:00
  • date_released: 2010-12-14
  • doi: 10.17989/ENCSR000ENL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ENL float

DNase-seq_ENCSR000ENL
DNase-seq ENCSR000ENL [biosample_summary="Homo sapiens choroid plexus epithelial cell"]
 HISTOGRAM FOR DNase-seq_ENCSR000ENL [0.0297, 47.9]
n
51,692,721
mean
1.89
sd
3.15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 516927211.61% 282779
chr1 4514097 1.81% 24713
chr2 4341019 1.79% 23819
chr3 3593776 1.81% 19679
chr4 2963819 1.56% 16375
chr5 3136906 1.73% 17108
chr6 3312596 1.94% 18098
chr7 2683161 1.68% 14755
chr8 2502287 1.72% 13666
chr9 2203096 1.59% 12060
chr10 2472905 1.85% 13496
chr11 2496296 1.85% 13508
chr12 2561793 1.92% 14065
chr13 1671639 1.46% 9178
chr14 1596199 1.49% 8774
chr15 1652140 1.62% 9007
chr16 1414163 1.57% 7686
chr17 1902619 2.29% 10300
chr18 1243129 1.55% 6861
chr19 1348161 2.30% 7189
chr20 1219916 1.89% 6640
chr21 619950 1.33% 3367
chr22 769744 1.51% 4206
chrX 1424200 0.91% 7946
chrY 49110 0.09% 283
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 282779 1 820 182.8 180
global segment-length histogram

Files

Filename Size md5
ENCFF467ANF.bed.gz 3.03 MB bf072c6e26e582a19943d39443007df2
ENCFF467ANF.tabix.bed.gz 2.76 MB 46ee64eabab7cd6ee7d885493e8c7a83
ENCFF467ANF.tabix.bed.gz.tbi 752.46 KB e5e7e536759f76134a5fa1e753c9ea9d
genomic_resource.yaml 1.77 KB 6f966b542f1f010d7305ceead8d2eace
statistics/