DNase-seq_ENCSR000ENK
DNase-seq ENCSR000ENK [biosample_summary="Homo sapiens fibroblast of the conjunctiva"]
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| Id: | DNase-seq/ENCSR000ENK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ENK [biosample_summary="Homo sapiens fibroblast of the conjunctiva"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN187LSB|/analyses/ENCAN187LSB/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF999HTN|/files/ENCFF999HTN/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 44742059 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF931ZJL|/files/ENCFF931ZJL/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 35826852 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF236GKU|/files/ENCFF236GKU/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 44428476 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF422YEO|/files/ENCFF422YEO/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 35563718 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENK | float |
DNase-seq_ENCSR000ENK |
DNase-seq ENCSR000ENK [biosample_summary="Homo sapiens fibroblast of the conjunctiva"]
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[4, 2.04e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF115KOG.bed.gz | 1.17 MB | 61e64308eff8d4ae497872f455cad378 |
| ENCFF115KOG.bed.gz.dvc | 101.0 B | 7dcf97c190c546e4661cc0948dd755db |
| ENCFF115KOG.tabix.bed.gz | 1.01 MB | 2a18cb8ef4eefa85e4848ca9c38e3a7b |
| ENCFF115KOG.tabix.bed.gz.dvc | 107.0 B | bcf4e3804819b1b94cf1854c2f0014b4 |
| ENCFF115KOG.tabix.bed.gz.tbi | 531.92 KB | 0a1d3dc5e8161ac7a703854cd1cdc237 |
| ENCFF115KOG.tabix.bed.gz.tbi.dvc | 110.0 B | ed7d54a6320fc56b8b46a46ed61a42ad |
| genomic_resource.yaml | 3.81 KB | 09ed4a421c561f2188780375e704f387 |
| genomic_resource_original.yaml | 3.71 KB | 0df89003a0e8a04b1d7adf67c1ef5bb2 |
| statistics/ |