Resource

Id DNase-seq/ENCSR000ENJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ENJ [biosample_summary="Homo sapiens cardiac muscle cell"]
Description
Labels
  • accession: ENCSR000ENJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000746/
  • biosample_summary: Homo sapiens cardiac muscle cell
  • date_created: 2014-01-16T21:44:41.273978+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000ENJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ENJ float

DNase-seq_ENCSR000ENJ

DNase-seq ENCSR000ENJ [biosample_summary="Homo sapiens cardiac muscle cell"]
HISTOGRAM FOR DNase-seq_ENCSR000ENJ [4, 3.36e+04]
n
50,265,353
mean
342
sd
706

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 502653531.56% 334824
chr1 4582149 1.84% 30522
chr2 4166308 1.72% 27758
chr3 3378713 1.70% 22501
chr4 2789511 1.47% 18580
chr5 2940893 1.62% 19592
chr6 3142375 1.84% 20928
chr7 2599938 1.63% 17316
chr8 2403152 1.66% 16013
chr9 2165802 1.56% 14429
chr10 2430253 1.82% 16184
chr11 2497454 1.85% 16637
chr12 2460811 1.85% 16393
chr13 1494932 1.31% 9955
chr14 1556978 1.45% 10374
chr15 1618956 1.59% 10782
chr16 1363888 1.51% 9082
chr17 1914686 2.30% 12754
chr18 1251839 1.56% 8342
chr19 1318300 2.25% 8782
chr20 1224379 1.90% 8160
chr21 585412 1.25% 3900
chr22 780036 1.53% 5199
chrX 1530488 0.98% 10188
chrY 68100 0.12% 453
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 334824 16 450 150.12 150
global segment-length histogram

Files

Filename Size md5
ENCFF156RTG.bed.gz 3.17 MB 3272f191b40bc65cb10ba3fcaf4f0879
ENCFF156RTG.tabix.bed.gz 2.76 MB d1eb39c0ef14f4582d08c1a203e3e145
ENCFF156RTG.tabix.bed.gz.tbi 801.24 KB 6e1c6d98c5f29f085dd5ca77241c8771
genomic_resource.yaml 1.29 KB 3238bd8db6f61cd5cd877b5f9631746a
statistics/