Resource
| Id | DNase-seq/ENCSR000ENJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ENJ [biosample_summary="Homo sapiens cardiac muscle cell"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN870MJQ|/analyses/ENCAN870MJQ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENJ | float |
DNase-seq_ENCSR000ENJ |
DNase-seq ENCSR000ENJ [biosample_summary="Homo sapiens cardiac muscle cell"]
|
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[4, 3.36e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 50265353 | 1.56% | 334824 |
| chr1 | 4582149 | 1.84% | 30522 |
| chr2 | 4166308 | 1.72% | 27758 |
| chr3 | 3378713 | 1.70% | 22501 |
| chr4 | 2789511 | 1.47% | 18580 |
| chr5 | 2940893 | 1.62% | 19592 |
| chr6 | 3142375 | 1.84% | 20928 |
| chr7 | 2599938 | 1.63% | 17316 |
| chr8 | 2403152 | 1.66% | 16013 |
| chr9 | 2165802 | 1.56% | 14429 |
| chr10 | 2430253 | 1.82% | 16184 |
| chr11 | 2497454 | 1.85% | 16637 |
| chr12 | 2460811 | 1.85% | 16393 |
| chr13 | 1494932 | 1.31% | 9955 |
| chr14 | 1556978 | 1.45% | 10374 |
| chr15 | 1618956 | 1.59% | 10782 |
| chr16 | 1363888 | 1.51% | 9082 |
| chr17 | 1914686 | 2.30% | 12754 |
| chr18 | 1251839 | 1.56% | 8342 |
| chr19 | 1318300 | 2.25% | 8782 |
| chr20 | 1224379 | 1.90% | 8160 |
| chr21 | 585412 | 1.25% | 3900 |
| chr22 | 780036 | 1.53% | 5199 |
| chrX | 1530488 | 0.98% | 10188 |
| chrY | 68100 | 0.12% | 453 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 334824 | 16 | 450 | 150.12 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF156RTG.bed.gz | 3.17 MB | 3272f191b40bc65cb10ba3fcaf4f0879 |
| ENCFF156RTG.tabix.bed.gz | 2.76 MB | d1eb39c0ef14f4582d08c1a203e3e145 |
| ENCFF156RTG.tabix.bed.gz.tbi | 801.24 KB | 6e1c6d98c5f29f085dd5ca77241c8771 |
| genomic_resource.yaml | 1.29 KB | 3238bd8db6f61cd5cd877b5f9631746a |
| statistics/ |
