DNase-seq_ENCSR000ENH
DNase-seq ENCSR000ENH [biosample_summary="Homo sapiens cardiac fibroblast"]
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| Id: | DNase-seq/ENCSR000ENH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ENH [biosample_summary="Homo sapiens cardiac fibroblast"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN026LXP|/analyses/ENCAN026LXP/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF859LTN|/files/ENCFF859LTN/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 35846266 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENH | float |
DNase-seq_ENCSR000ENH |
DNase-seq ENCSR000ENH [biosample_summary="Homo sapiens cardiac fibroblast"]
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[4, 2.91e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF111NEU.bed.gz | 2.96 MB | ff8f5466cae5967572c1435dc83109c9 |
| ENCFF111NEU.bed.gz.dvc | 101.0 B | 5d8c21165bb93ca069475f750cf43849 |
| ENCFF111NEU.tabix.bed.gz | 2.57 MB | 55019e8086ee108d051e2165b638199a |
| ENCFF111NEU.tabix.bed.gz.dvc | 107.0 B | f073a1d3194a5a1a22aecf93ffc78ff5 |
| ENCFF111NEU.tabix.bed.gz.tbi | 779.86 KB | ad4908fa0f7b808c156e7ca3c3e1872e |
| ENCFF111NEU.tabix.bed.gz.tbi.dvc | 110.0 B | 26178eeb9e6c5660086d100f792d0921 |
| genomic_resource.yaml | 1.91 KB | ebc7e07f1a2cf91736ecc63e8f6d9059 |
| genomic_resource_original.yaml | 1.83 KB | 71101d762ec82f29d5b8207206a0e151 |
| statistics/ |