DNase-seq_ENCSR000ENF
DNase-seq ENCSR000ENF [biosample_summary="Homo sapiens brain pericyte"]
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| Id: | DNase-seq/ENCSR000ENF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ENF [biosample_summary="Homo sapiens brain pericyte"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF425VFT|/files/ENCFF425VFT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 44115762 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF425VFT|/files/ENCFF425VFT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENF | float |
DNase-seq_ENCSR000ENF |
DNase-seq ENCSR000ENF [biosample_summary="Homo sapiens brain pericyte"]
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[0.189, 42] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF494ABI.bed.gz | 489.18 KB | 4f7b85de0a420002a75182e1ba30ce5e |
| ENCFF494ABI.bed.gz.dvc | 100.0 B | 676208b570b27f6e6af05f2626364d53 |
| ENCFF494ABI.tabix.bed.gz | 437.98 KB | 6cfc2720f66536c3836691b0f474aee6 |
| ENCFF494ABI.tabix.bed.gz.dvc | 106.0 B | 7ef596ea93561feb6ed1240fab07131c |
| ENCFF494ABI.tabix.bed.gz.tbi | 270.91 KB | d4c87e243f1992c853372b32177d102e |
| ENCFF494ABI.tabix.bed.gz.tbi.dvc | 110.0 B | aa1ab2e27f93d3de65dbb9cb14b63261 |
| genomic_resource.yaml | 2.58 KB | 0c776fda2824ad31039f867ad199d7cf |
| genomic_resource_original.yaml | 2.51 KB | ceed819752caa35e8faffdace7bf8015 |
| statistics/ |