DNase-seq_ENCSR000ENE
DNase-seq ENCSR000ENE [biosample_summary="Homo sapiens brain microvascular endothelial cell"]
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| Id: | DNase-seq/ENCSR000ENE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ENE [biosample_summary="Homo sapiens brain microvascular endothelial cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF774WOB|/files/ENCFF774WOB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 35455938 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF788MPI|/files/ENCFF788MPI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 32284233 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENE | float |
DNase-seq_ENCSR000ENE |
DNase-seq ENCSR000ENE [biosample_summary="Homo sapiens brain microvascular endothelial cell"]
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[0.198, 22.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF305COW.bed.gz | 974.46 KB | c39d40906c0a65b023638374698d1df5 |
| ENCFF305COW.bed.gz.dvc | 100.0 B | c8e42b7dac7013e9f2abf01cde58bfbe |
| ENCFF305COW.tabix.bed.gz | 868.56 KB | ffcc6989e3297788eaaf1e6f5d550cf7 |
| ENCFF305COW.tabix.bed.gz.dvc | 106.0 B | 0f2d7226ec800842a6618d7f3d6f946e |
| ENCFF305COW.tabix.bed.gz.tbi | 447.65 KB | 47da7308f88549bd5c56914c1f6d30b0 |
| ENCFF305COW.tabix.bed.gz.tbi.dvc | 110.0 B | 33edb4d70f8ac6dce83c4e1eb0447da1 |
| genomic_resource.yaml | 2.43 KB | fe33cf973bdc11013bf7de0d9c7a6ca1 |
| genomic_resource_original.yaml | 2.34 KB | 530b107d8c2381056e651ccb1ee8f890 |
| statistics/ |