Resource
| Id | DNase-seq/ENCSR000ENE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000ENE [biosample_summary="Homo sapiens brain microvascular endothelial cell"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF774WOB|/files/ENCFF774WOB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 35455938 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF788MPI|/files/ENCFF788MPI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 32284233 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENE | float |
DNase-seq_ENCSR000ENE |
DNase-seq ENCSR000ENE [biosample_summary="Homo sapiens brain microvascular endothelial cell"]
|
 |
[0.198, 22.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16668778 | 0.52% | 91208 |
| chr1 | 1463762 | 0.59% | 8057 |
| chr2 | 1434658 | 0.59% | 7854 |
| chr3 | 1203146 | 0.61% | 6529 |
| chr4 | 1002919 | 0.53% | 5565 |
| chr5 | 1020237 | 0.56% | 5536 |
| chr6 | 1101063 | 0.64% | 5974 |
| chr7 | 857465 | 0.54% | 4763 |
| chr8 | 828603 | 0.57% | 4523 |
| chr9 | 677172 | 0.49% | 3717 |
| chr10 | 781392 | 0.58% | 4228 |
| chr11 | 831881 | 0.62% | 4539 |
| chr12 | 835490 | 0.63% | 4599 |
| chr13 | 546648 | 0.48% | 2959 |
| chr14 | 485806 | 0.45% | 2670 |
| chr15 | 518627 | 0.51% | 2845 |
| chr16 | 441098 | 0.49% | 2406 |
| chr17 | 578376 | 0.69% | 3151 |
| chr18 | 398869 | 0.50% | 2202 |
| chr19 | 426707 | 0.73% | 2258 |
| chr20 | 364203 | 0.57% | 2034 |
| chr21 | 204313 | 0.44% | 1102 |
| chr22 | 225834 | 0.44% | 1247 |
| chrX | 440369 | 0.28% | 2449 |
| chrY | 140 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 91208 | 6 | 940 | 182.76 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF305COW.bed.gz | 974.46 KB | c39d40906c0a65b023638374698d1df5 |
| ENCFF305COW.tabix.bed.gz | 868.56 KB | ffcc6989e3297788eaaf1e6f5d550cf7 |
| ENCFF305COW.tabix.bed.gz.tbi | 447.65 KB | 47da7308f88549bd5c56914c1f6d30b0 |
| genomic_resource.yaml | 2.43 KB | fe33cf973bdc11013bf7de0d9c7a6ca1 |
| statistics/ |