Resource

Id DNase-seq/ENCSR000ENDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000END [biosample_summary="Homo sapiens amniotic epithelial cell"]
Description
Labels
  • accession: ENCSR000END
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002536/
  • biosample_summary: Homo sapiens amniotic epithelial cell
  • date_created: 2014-01-17T20:40:09.256949+00:00
  • date_released: 2010-12-14
  • doi: 10.17989/ENCSR000END
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000END float

DNase-seq_ENCSR000END
DNase-seq ENCSR000END [biosample_summary="Homo sapiens amniotic epithelial cell"]
 HISTOGRAM FOR DNase-seq_ENCSR000END [0.0303, 48.7]
n
51,810,060
mean
1.91
sd
3.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 518100601.61% 281779
chr1 4634837 1.86% 25227
chr2 4372012 1.81% 23842
chr3 3488869 1.76% 19058
chr4 3112816 1.64% 17066
chr5 3122450 1.72% 16999
chr6 3216321 1.88% 17464
chr7 2612371 1.64% 14250
chr8 2546006 1.75% 13756
chr9 2253049 1.63% 12242
chr10 2511835 1.88% 13636
chr11 2579333 1.91% 13972
chr12 2563467 1.92% 13935
chr13 1662619 1.45% 9082
chr14 1618918 1.51% 8787
chr15 1647241 1.62% 8925
chr16 1379228 1.53% 7507
chr17 1967884 2.36% 10667
chr18 1217757 1.52% 6611
chr19 1262758 2.15% 6753
chr20 1167417 1.81% 6304
chr21 580515 1.24% 3148
chr22 775842 1.53% 4227
chrX 1459458 0.94% 8001
chrY 57057 0.10% 320
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 281779 1 900 183.87 180
global segment-length histogram

Files

Filename Size md5
ENCFF522WMG.bed.gz 3.03 MB 1a8ba6c50edb11c834f8831482b669c5
ENCFF522WMG.tabix.bed.gz 2.76 MB 947270ac1a96117801be318048b4d817
ENCFF522WMG.tabix.bed.gz.tbi 725.38 KB f2523fec228b325ac883b841be4b3451
genomic_resource.yaml 1.75 KB d9bd7495e97d0571f4a43b1a4bfccc86
statistics/