| Id: | DNase-seq/ENCSR000END |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000END [biosample_summary="Homo sapiens amniotic epithelial cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF123GUH|/files/ENCFF123GUH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 25723565 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000END | float |
DNase-seq_ENCSR000END |
DNase-seq ENCSR000END [biosample_summary="Homo sapiens amniotic epithelial cell"]
|
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[0.0303, 48.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF522WMG.bed.gz | 3.03 MB | 1a8ba6c50edb11c834f8831482b669c5 |
| ENCFF522WMG.bed.gz.dvc | 101.0 B | 68a8eff2804db44078036b23eab243fe |
| ENCFF522WMG.tabix.bed.gz | 2.76 MB | 947270ac1a96117801be318048b4d817 |
| ENCFF522WMG.tabix.bed.gz.dvc | 107.0 B | 0b6cdc4546ea282e1c9235e9e0524df1 |
| ENCFF522WMG.tabix.bed.gz.tbi | 725.38 KB | f2523fec228b325ac883b841be4b3451 |
| ENCFF522WMG.tabix.bed.gz.tbi.dvc | 110.0 B | d65affda66f47215abc91a094575ead8 |
| genomic_resource.yaml | 1.75 KB | d9bd7495e97d0571f4a43b1a4bfccc86 |
| genomic_resource_original.yaml | 1.67 KB | 4a81ee1efc1356031e0a51e7c37b8ae9 |
| statistics/ |