DNase-seq_ENCSR000ENC
DNase-seq ENCSR000ENC [biosample_summary="Homo sapiens astrocyte of the cerebellum"]
×
| Id: | DNase-seq/ENCSR000ENC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ENC [biosample_summary="Homo sapiens astrocyte of the cerebellum"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF510MDM|/files/ENCFF510MDM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 39982004 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF561FMQ|/files/ENCFF561FMQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28365054 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENC | float |
DNase-seq_ENCSR000ENC |
DNase-seq ENCSR000ENC [biosample_summary="Homo sapiens astrocyte of the cerebellum"]
|
|
[0.176, 23.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF036TMU.bed.gz | 1.03 MB | 5414d96bc0a4d9697d58906acee98b0d |
| ENCFF036TMU.bed.gz.dvc | 101.0 B | 6b8bf499e6275148628cd946d4bb3e0e |
| ENCFF036TMU.tabix.bed.gz | 950.95 KB | 22adf4c749c4294b7229effe11179994 |
| ENCFF036TMU.tabix.bed.gz.dvc | 106.0 B | afd7c6313395ebc294cf72ec80a07503 |
| ENCFF036TMU.tabix.bed.gz.tbi | 484.8 KB | 9264b4e47d28f41bda914f14e363080e |
| ENCFF036TMU.tabix.bed.gz.tbi.dvc | 110.0 B | 5427a613d0ae99bfc25ddb7f7167f7f8 |
| genomic_resource.yaml | 2.41 KB | 8a4071dda921de1a744b38f55efbedd6 |
| genomic_resource_original.yaml | 2.32 KB | 603602d65104c532d25351451d11a937 |
| statistics/ |