| Id: | DNase-seq/ENCSR000ENB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000ENB [biosample_summary="Homo sapiens astrocyte of the spinal cord"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN047VOT|/analyses/ENCAN047VOT/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF885IAD|/files/ENCFF885IAD/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 37353886 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000ENB | float |
DNase-seq_ENCSR000ENB |
DNase-seq ENCSR000ENB [biosample_summary="Homo sapiens astrocyte of the spinal cord"]
|
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[2, 2.05e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF639MUE.bed.gz | 2.9 MB | d8e917934b2081b727931646a7a0f361 |
| ENCFF639MUE.bed.gz.dvc | 101.0 B | b4b40fd629f0508856460f97251bb9e6 |
| ENCFF639MUE.tabix.bed.gz | 2.5 MB | 6fbbf0dd814053ebacaeb0316aa47e9f |
| ENCFF639MUE.tabix.bed.gz.dvc | 107.0 B | 28be87eda931819ae3a57b52b25d7c9b |
| ENCFF639MUE.tabix.bed.gz.tbi | 787.18 KB | dd67134c20c16cf0fca8aeeda1b47273 |
| ENCFF639MUE.tabix.bed.gz.tbi.dvc | 110.0 B | be54763528cad510a4f0d990ba943d16 |
| genomic_resource.yaml | 1.94 KB | dcb86c44203ccbdb24c7fe8924e268e4 |
| genomic_resource_original.yaml | 1.85 KB | 1f9b6b0864032cac5b8cadbdcadd90d7 |
| statistics/ |