Resource

Id DNase-seq/ENCSR000ENBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000ENB [biosample_summary="Homo sapiens astrocyte of the spinal cord"]
Description
Labels
  • accession: ENCSR000ENB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002606/
  • biosample_summary: Homo sapiens astrocyte of the spinal cord
  • date_created: 2014-01-16T21:44:36.749363+00:00
  • date_released: 2011-05-04
  • doi: 10.17989/ENCSR000ENB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000ENB float

DNase-seq_ENCSR000ENB

DNase-seq ENCSR000ENB [biosample_summary="Homo sapiens astrocyte of the spinal cord"]
HISTOGRAM FOR DNase-seq_ENCSR000ENB [2, 2.05e+05]
n
45,717,881
mean
255
sd
658

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 457178811.42% 304359
chr1 3952187 1.59% 26317
chr2 3913906 1.62% 26040
chr3 3200463 1.61% 21298
chr4 2741871 1.44% 18251
chr5 2832071 1.56% 18855
chr6 2868817 1.68% 19108
chr7 2412826 1.51% 16056
chr8 2244329 1.55% 14946
chr9 1955542 1.41% 13023
chr10 2142465 1.60% 14266
chr11 2173882 1.61% 14473
chr12 2239656 1.68% 14911
chr13 1471746 1.29% 9801
chr14 1379071 1.29% 9180
chr15 1459979 1.43% 9715
chr16 1246850 1.38% 8295
chr17 1622592 1.95% 10809
chr18 1166348 1.45% 7766
chr19 1026424 1.75% 6835
chr20 1035050 1.61% 6898
chr21 551343 1.18% 3672
chr22 641166 1.26% 4268
chrX 1421897 0.91% 9460
chrY 17400 0.03% 116
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 304359 1 450 150.21 150
global segment-length histogram

Files

Filename Size md5
ENCFF639MUE.bed.gz 2.9 MB d8e917934b2081b727931646a7a0f361
ENCFF639MUE.tabix.bed.gz 2.5 MB 6fbbf0dd814053ebacaeb0316aa47e9f
ENCFF639MUE.tabix.bed.gz.tbi 787.18 KB dd67134c20c16cf0fca8aeeda1b47273
genomic_resource.yaml 1.94 KB dcb86c44203ccbdb24c7fe8924e268e4
statistics/