Resource

Id DNase-seq/ENCSR000EMScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EMS [biosample_summary="Homo sapiens GM12865"]
Description
Labels
  • accession: ENCSR000EMS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005338/
  • biosample_summary: Homo sapiens GM12865
  • date_created: 2013-12-12T07:08:27.979640+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EMS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EMS float

DNase-seq_ENCSR000EMS
DNase-seq ENCSR000EMS [biosample_summary="Homo sapiens GM12865"]
 HISTOGRAM FOR DNase-seq_ENCSR000EMS [2, 6.81e+04]
n
33,905,976
mean
416
sd
970

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 339059761.05% 225785
chr1 3121936 1.25% 20786
chr2 2679178 1.11% 17835
chr3 2316775 1.17% 15426
chr4 1721090 0.90% 11453
chr5 1871276 1.03% 12456
chr6 2117841 1.24% 14109
chr7 1684402 1.06% 11218
chr8 1501101 1.03% 9992
chr9 1364827 0.99% 9089
chr10 1584781 1.18% 10553
chr11 1645802 1.22% 10965
chr12 1705970 1.28% 11364
chr13 916606 0.80% 6104
chr14 1143223 1.07% 7611
chr15 1134550 1.11% 7558
chr16 1100283 1.22% 7329
chr17 1434157 1.72% 9552
chr18 767694 0.96% 5110
chr19 1194145 2.04% 7955
chr20 850620 1.32% 5668
chr21 383168 0.82% 2551
chr22 613078 1.21% 4086
chrX 1042073 0.67% 6939
chrY 11400 0.02% 76
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 225785 6 450 150.17 150
global segment-length histogram

Files

Filename Size md5
ENCFF745COY.bed.gz 2.17 MB cf7ac8ee1be3c2b0f2f065673b822147
ENCFF745COY.tabix.bed.gz 1.88 MB a1b09a55b8db94928b50106af8d05227
ENCFF745COY.tabix.bed.gz.tbi 658.07 KB e680f90df48a0dffa7546e12ad3f4f5c
genomic_resource.yaml 1.26 KB 8a016c47094d2505cbc48408e6bb25f9
statistics/