Resource

Id DNase-seq/ENCSR000EMRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EMR [biosample_summary="Homo sapiens GM12864"]
Description
Labels
  • accession: ENCSR000EMR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005337/
  • biosample_summary: Homo sapiens GM12864
  • date_created: 2013-12-12T07:08:26.663836+00:00
  • date_released: 2011-05-04
  • doi: 10.17989/ENCSR000EMR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EMR float

DNase-seq_ENCSR000EMR

DNase-seq ENCSR000EMR [biosample_summary="Homo sapiens GM12864"]
HISTOGRAM FOR DNase-seq_ENCSR000EMR [2, 3.42e+04]
n
10,656,957
mean
62.5
sd
156

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 106569570.33% 70940
chr1 1022097 0.41% 6810
chr2 847050 0.35% 5639
chr3 684831 0.35% 4559
chr4 499825 0.26% 3329
chr5 570900 0.31% 3798
chr6 679924 0.40% 4528
chr7 526650 0.33% 3505
chr8 491700 0.34% 3267
chr9 417687 0.30% 2778
chr10 500550 0.37% 3330
chr11 522532 0.39% 3480
chr12 542100 0.41% 3609
chr13 263395 0.23% 1750
chr14 349570 0.33% 2328
chr15 346580 0.34% 2311
chr16 364335 0.40% 2427
chr17 480984 0.58% 3202
chr18 216534 0.27% 1439
chr19 429750 0.73% 2862
chr20 268650 0.42% 1789
chr21 118463 0.25% 789
chr22 210300 0.41% 1398
chrX 283800 0.18% 1889
chrY 18750 0.03% 124
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 70940 30 300 150.22 150
global segment-length histogram

Files

Filename Size md5
ENCFF355GZH.bed.gz 693.23 KB 5bbd7eeda9c985bfedc2563dad11ba9f
ENCFF355GZH.tabix.bed.gz 596.06 KB ce78104d191511d8775987d6f7ead8ac
ENCFF355GZH.tabix.bed.gz.tbi 360.55 KB 6034e457c22a2ecb1fc47dae1f908b8f
genomic_resource.yaml 1.26 KB 596a41c6aff5c900ef9161b54250a3d5
statistics/