Resource
| Id | DNase-seq/ENCSR000EMP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EMP [biosample_summary="Homo sapiens GM04504"] |
| Description |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Alignment file {ENCFF708GUH|/files/ENCFF708GUH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30870575 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF928WMM|/files/ENCFF928WMM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30349249 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMP | float |
DNase-seq_ENCSR000EMP |
DNase-seq ENCSR000EMP [biosample_summary="Homo sapiens GM04504"]
|
 |
[0.198, 38.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16509487 | 0.51% | 89740 |
| chr1 | 1541201 | 0.62% | 8418 |
| chr2 | 1391396 | 0.57% | 7579 |
| chr3 | 1116374 | 0.56% | 6100 |
| chr4 | 816135 | 0.43% | 4502 |
| chr5 | 940140 | 0.52% | 5129 |
| chr6 | 1017132 | 0.60% | 5471 |
| chr7 | 848508 | 0.53% | 4657 |
| chr8 | 796447 | 0.55% | 4300 |
| chr9 | 682653 | 0.49% | 3712 |
| chr10 | 781865 | 0.58% | 4270 |
| chr11 | 835142 | 0.62% | 4495 |
| chr12 | 813336 | 0.61% | 4399 |
| chr13 | 440014 | 0.38% | 2396 |
| chr14 | 499114 | 0.47% | 2692 |
| chr15 | 562262 | 0.55% | 3015 |
| chr16 | 516802 | 0.57% | 2841 |
| chr17 | 679841 | 0.82% | 3670 |
| chr18 | 366459 | 0.46% | 2031 |
| chr19 | 553149 | 0.94% | 2868 |
| chr20 | 418455 | 0.65% | 2279 |
| chr21 | 181721 | 0.39% | 986 |
| chr22 | 272576 | 0.54% | 1483 |
| chrX | 438765 | 0.28% | 2447 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 89740 | 6 | 820 | 183.97 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF041KUX.bed.gz | 968.72 KB | 727c27ab2d462ce7aa8045c57d0a5ffb |
| ENCFF041KUX.tabix.bed.gz | 863.13 KB | 63301ddf891fed6249da17df6dd020d2 |
| ENCFF041KUX.tabix.bed.gz.tbi | 434.53 KB | 0c60cb92c03c442f5b3ac4e15cdab644 |
| genomic_resource.yaml | 2.35 KB | 413e19b6db21c147a83a933dbf65b52b |
| statistics/ |