DNase-seq_ENCSR000EMO
DNase-seq ENCSR000EMO [biosample_summary="Homo sapiens GM04503"]
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| Id: | DNase-seq/ENCSR000EMO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EMO [biosample_summary="Homo sapiens GM04503"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF572JEV|/files/ENCFF572JEV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 33540949 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF239TYW|/files/ENCFF239TYW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 23846115 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMO | float |
DNase-seq_ENCSR000EMO |
DNase-seq ENCSR000EMO [biosample_summary="Homo sapiens GM04503"]
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[0.12, 41.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF847MLV.bed.gz | 842.92 KB | 976968d5f35822030a7a314732bacb5f |
| ENCFF847MLV.bed.gz.dvc | 100.0 B | 22926eac8930f63d6871d492ce89b5c5 |
| ENCFF847MLV.tabix.bed.gz | 748.98 KB | 1db79abe467b2852a844bb430e23f7f0 |
| ENCFF847MLV.tabix.bed.gz.dvc | 106.0 B | 8bbcf51698228ed45e7e9689eed94104 |
| ENCFF847MLV.tabix.bed.gz.tbi | 397.54 KB | f4580c9e04ec00d3f0a53d86a070b83f |
| ENCFF847MLV.tabix.bed.gz.tbi.dvc | 110.0 B | e447237dae7920b476bf2b2cf851cf61 |
| genomic_resource.yaml | 2.35 KB | 90c64cafa1ea82f9e5b46b5908e8e8b3 |
| genomic_resource_original.yaml | 2.28 KB | 7579e1e4a1f599e3a2849c31e942573f |
| statistics/ |