Resource

Id DNase-seq/ENCSR000EMNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EMN [biosample_summary="Homo sapiens CMK"]
Description
Labels
  • accession: ENCSR000EMN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003037/
  • biosample_summary: Homo sapiens CMK
  • date_created: 2013-09-13T15:58:15.716177-08:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EMN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EMN float

DNase-seq_ENCSR000EMN
DNase-seq ENCSR000EMN [biosample_summary="Homo sapiens CMK"]
 HISTOGRAM FOR DNase-seq_ENCSR000EMN [2, 4.78e+03]
n
11,347,835
mean
63.2
sd
75.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 113478350.35% 75528
chr1 1253700 0.50% 8348
chr2 877665 0.36% 5835
chr3 658200 0.33% 4383
chr4 548447 0.29% 3647
chr5 540274 0.30% 3595
chr6 660995 0.39% 4400
chr7 503634 0.32% 3352
chr8 452100 0.31% 3005
chr9 408600 0.30% 2720
chr10 513586 0.38% 3415
chr11 596483 0.44% 3975
chr12 550650 0.41% 3669
chr13 297900 0.26% 1982
chr14 333811 0.31% 2223
chr15 376800 0.37% 2508
chr16 412383 0.46% 2746
chr17 518100 0.62% 3450
chr18 187050 0.23% 1245
chr19 566005 0.97% 3767
chr20 328583 0.51% 2187
chr21 184433 0.39% 1229
chr22 243082 0.48% 1616
chrX 315704 0.20% 2100
chrY 19650 0.03% 131
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 75528 26 450 150.25 150
global segment-length histogram

Files

Filename Size md5
ENCFF437IAA.bed.gz 734.48 KB 04866cc25eb6084db3a17e3d57457ed1
ENCFF437IAA.tabix.bed.gz 633.74 KB 6c1ac85e5c413b03b4059cdcb66fccaa
ENCFF437IAA.tabix.bed.gz.tbi 373.26 KB 87ed79d47b1dfa7abfde18dac602f33c
genomic_resource.yaml 1.25 KB 9098e96ae987876a909cd1c4ec4f5c91
statistics/