Resource

Id DNase-seq/ENCSR000EMLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EML [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (26 years)"]
Description
Labels
  • accession: ENCSR000EML
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (26 years)
  • date_created: 2013-12-12T07:08:19.997757+00:00
  • date_released: 2012-07-23
  • doi: 10.17989/ENCSR000EML
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (26 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EML float

DNase-seq_ENCSR000EML
DNase-seq ENCSR000EML [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (26 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR000EML [6, 1.63e+04]
n
18,289,755
mean
466
sd
1.01e+03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 182897550.57% 121751
chr1 1788747 0.72% 11905
chr2 1468642 0.61% 9782
chr3 1125353 0.57% 7484
chr4 802965 0.42% 5348
chr5 917793 0.51% 6107
chr6 1134123 0.66% 7552
chr7 905784 0.57% 6026
chr8 721186 0.50% 4798
chr9 690739 0.50% 4599
chr10 841836 0.63% 5598
chr11 880603 0.65% 5866
chr12 966399 0.73% 6435
chr13 475183 0.42% 3157
chr14 650474 0.61% 4333
chr15 584676 0.57% 3895
chr16 593586 0.66% 3952
chr17 899113 1.08% 5991
chr18 341554 0.42% 2272
chr19 782293 1.33% 5212
chr20 448284 0.70% 2984
chr21 261671 0.56% 1740
chr22 364372 0.72% 2425
chrX 594729 0.38% 3959
chrY 49650 0.09% 331
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 121751 2 450 150.22 150
global segment-length histogram

Files

Filename Size md5
ENCFF602XCK.bed.gz 1.18 MB d56bb8ae979cf6a00eafa669ae9c5500
ENCFF602XCK.tabix.bed.gz 1.02 MB 924e209b836bf209d05070fcb1d7d5aa
ENCFF602XCK.tabix.bed.gz.tbi 415.22 KB ce7dadcb0e9e86cf0a8fd2692826585d
genomic_resource.yaml 1.5 KB 5f2ac692bc5d69282f72c81ba2cc28d4
statistics/