Resource

Id DNase-seq/ENCSR000EMKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EMK [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"]
Description
Labels
  • accession: ENCSR000EMK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000837/
  • biosample_summary: Homo sapiens hematopoietic multipotent progenitor cell
  • date_created: 2013-09-13T16:02:28.721027-08:00
  • date_released: 2011-10-19
  • doi: 10.17989/ENCSR000EMK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EMK float

DNase-seq_ENCSR000EMK

DNase-seq ENCSR000EMK [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"]
HISTOGRAM FOR DNase-seq_ENCSR000EMK [0.104, 39.2]
n
17,977,121
mean
4.13
sd
5.11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 179771210.56% 94311
chr1 1710076 0.69% 8885
chr2 1343850 0.55% 7114
chr3 1126504 0.57% 5935
chr4 839519 0.44% 4461
chr5 901487 0.50% 4789
chr6 1072031 0.63% 5581
chr7 925573 0.58% 4844
chr8 767064 0.53% 4078
chr9 731282 0.53% 3863
chr10 841859 0.63% 4473
chr11 871499 0.65% 4582
chr12 918335 0.69% 4814
chr13 441669 0.39% 2342
chr14 581681 0.54% 3068
chr15 581577 0.57% 3081
chr16 629147 0.70% 3281
chr17 874233 1.05% 4488
chr18 358768 0.45% 1889
chr19 861535 1.47% 4265
chr20 490239 0.76% 2633
chr21 212517 0.45% 1113
chr22 373802 0.74% 1948
chrX 503451 0.32% 2678
chrY 19423 0.03% 106
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 94311 1 960 190.62 180
global segment-length histogram

Files

Filename Size md5
ENCFF478PVT.bed.gz 1015.12 KB 318627dd346e9cfbfca7aafac4318a09
ENCFF478PVT.tabix.bed.gz 914.22 KB 944392a35570f92be31b1782102cc0ba
ENCFF478PVT.tabix.bed.gz.tbi 411.63 KB cdc3ccb3c9a666d0b40fbb7c788c10e3
genomic_resource.yaml 1.82 KB 218af3be9cff6c6e01fb252f07df6713
statistics/