DNase-seq_ENCSR000EMK
DNase-seq ENCSR000EMK [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"]
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| Id: | DNase-seq/ENCSR000EMK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EMK [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male output_type: peaks audit_warning: Alignment file {ENCFF123VCS|/files/ENCFF123VCS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 47960840 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMK | float |
DNase-seq_ENCSR000EMK |
DNase-seq ENCSR000EMK [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"]
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[0.104, 39.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF478PVT.bed.gz | 1015.12 KB | 318627dd346e9cfbfca7aafac4318a09 |
| ENCFF478PVT.bed.gz.dvc | 101.0 B | 63bfa0cc6ae6aa088e707f18809940d7 |
| ENCFF478PVT.tabix.bed.gz | 914.22 KB | 944392a35570f92be31b1782102cc0ba |
| ENCFF478PVT.tabix.bed.gz.dvc | 106.0 B | ca87611ca6964a8838aef23faa3ba9dc |
| ENCFF478PVT.tabix.bed.gz.tbi | 411.63 KB | cdc3ccb3c9a666d0b40fbb7c788c10e3 |
| ENCFF478PVT.tabix.bed.gz.tbi.dvc | 110.0 B | 0829fdc7c4b21e3ac6d0d283a67fa3a4 |
| genomic_resource.yaml | 1.82 KB | 218af3be9cff6c6e01fb252f07df6713 |
| genomic_resource_original.yaml | 1.72 KB | 0ba2291c3645b41fb9cbbf91fec5deb7 |
| statistics/ |