Resource
| Id | DNase-seq/ENCSR000EMK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EMK [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"] |
| Description |
status: released biological_replicates: Rep 1 summary: male output_type: peaks audit_warning: Alignment file {ENCFF123VCS|/files/ENCFF123VCS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 47960840 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EMK | float |
DNase-seq_ENCSR000EMK |
DNase-seq ENCSR000EMK [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell"]
|
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[0.104, 39.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 17977121 | 0.56% | 94311 |
| chr1 | 1710076 | 0.69% | 8885 |
| chr2 | 1343850 | 0.55% | 7114 |
| chr3 | 1126504 | 0.57% | 5935 |
| chr4 | 839519 | 0.44% | 4461 |
| chr5 | 901487 | 0.50% | 4789 |
| chr6 | 1072031 | 0.63% | 5581 |
| chr7 | 925573 | 0.58% | 4844 |
| chr8 | 767064 | 0.53% | 4078 |
| chr9 | 731282 | 0.53% | 3863 |
| chr10 | 841859 | 0.63% | 4473 |
| chr11 | 871499 | 0.65% | 4582 |
| chr12 | 918335 | 0.69% | 4814 |
| chr13 | 441669 | 0.39% | 2342 |
| chr14 | 581681 | 0.54% | 3068 |
| chr15 | 581577 | 0.57% | 3081 |
| chr16 | 629147 | 0.70% | 3281 |
| chr17 | 874233 | 1.05% | 4488 |
| chr18 | 358768 | 0.45% | 1889 |
| chr19 | 861535 | 1.47% | 4265 |
| chr20 | 490239 | 0.76% | 2633 |
| chr21 | 212517 | 0.45% | 1113 |
| chr22 | 373802 | 0.74% | 1948 |
| chrX | 503451 | 0.32% | 2678 |
| chrY | 19423 | 0.03% | 106 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 94311 | 1 | 960 | 190.62 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF478PVT.bed.gz | 1015.12 KB | 318627dd346e9cfbfca7aafac4318a09 |
| ENCFF478PVT.tabix.bed.gz | 914.22 KB | 944392a35570f92be31b1782102cc0ba |
| ENCFF478PVT.tabix.bed.gz.tbi | 411.63 KB | cdc3ccb3c9a666d0b40fbb7c788c10e3 |
| genomic_resource.yaml | 1.82 KB | 218af3be9cff6c6e01fb252f07df6713 |
| statistics/ |
