Resource

Id DNase-seq/ENCSR000EMHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EMH [biosample_summary="Homo sapiens stromal cell of bone marrow male"]
Description
Labels
  • accession: ENCSR000EMH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0010001/
  • biosample_summary: Homo sapiens stromal cell of bone marrow male
  • date_created: 2013-09-13T16:51:46.118267-08:00
  • date_released: 2012-07-23
  • doi: 10.17989/ENCSR000EMH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EMH float

DNase-seq_ENCSR000EMH

DNase-seq ENCSR000EMH [biosample_summary="Homo sapiens stromal cell of bone marrow male"]
HISTOGRAM FOR DNase-seq_ENCSR000EMH [2, 2.53e+03]
n
25,370,634
mean
100
sd
124

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 253706340.79% 169002
chr1 2322414 0.93% 15473
chr2 2151198 0.89% 14321
chr3 1772381 0.89% 11807
chr4 1384662 0.73% 9224
chr5 1531584 0.84% 10203
chr6 1605279 0.94% 10695
chr7 1309780 0.82% 8722
chr8 1230088 0.85% 8196
chr9 1114050 0.80% 7422
chr10 1223676 0.91% 8150
chr11 1246526 0.92% 8305
chr12 1270800 0.95% 8467
chr13 695080 0.61% 4632
chr14 781568 0.73% 5206
chr15 813805 0.80% 5421
chr16 724022 0.80% 4821
chr17 932957 1.12% 6215
chr18 569550 0.71% 3794
chr19 648608 1.11% 4325
chr20 621550 0.96% 4140
chr21 296550 0.63% 1975
chr22 379756 0.75% 2529
chrX 720750 0.46% 4799
chrY 24000 0.04% 160
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 169002 8 300 150.12 150
global segment-length histogram

Files

Filename Size md5
ENCFF254WCU.bed.gz 1.6 MB 4d8cdfa5b7cdfeea002f78fe527b5ead
ENCFF254WCU.tabix.bed.gz 1.38 MB ee06abb2e1fb3d9521c8114155ab96ba
ENCFF254WCU.tabix.bed.gz.tbi 636.36 KB 8dfcf42db58192c7a8e2b67ef4afbb2b
genomic_resource.yaml 1.33 KB e2b73ef505ad7afd06512ca71377ab14
statistics/